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fixed clustergrammer_api
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@cornhundred
cornhundred committed Feb 17, 2017
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2 changes: 1 addition & 1 deletion docs/_build_html/_sources/clustergrammer_py.rst.txt
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Expand Up @@ -55,7 +55,7 @@ Clustergrammer-PY generates a Network object (see `Network class definition`_),

When a matrix is loaded into an instance of ``Network`` (e.g. ``net``) it is stored in the data, ``dat``, attribute. Normalization and filtering will modify the ``dat`` representation of the matrix. When the matrix is clustered (by calling :ref:`make_clust`)

.. automodule:: clustergrammer
.. automodule:: clustergrammer_py

.. autoclass:: Network
:members:
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147 changes: 82 additions & 65 deletions docs/_build_html/clustergrammer_py.html
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59 changes: 37 additions & 22 deletions docs/_build_html/genindex.html
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Expand Up @@ -153,6 +153,7 @@ <h1 id="index">Index</h1>
| <a href="#N"><strong>N</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#U"><strong>U</strong></a>
| <a href="#W"><strong>W</strong></a>

Expand Down Expand Up @@ -188,107 +189,115 @@ <h2 id="A">A</h2>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#module-clustergrammer">clustergrammer (module)</a>
<li><a href="clustergrammer_js.html#Clustergrammer">Clustergrammer() (class)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_js.html#Clustergrammer">Clustergrammer() (class)</a>
<li><a href="clustergrammer_py.html#module-clustergrammer_py">clustergrammer_py (module)</a>
</li>
</ul></td>
</tr></table>

<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.dat_to_df">dat_to_df() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.dat_to_df">dat_to_df() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.df_to_dat">df_to_dat() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.df_to_dat">df_to_dat() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>

<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.enrichr">enrichr() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.enrichr">enrichr() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.export_df">export_df() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.export_df">export_df() (clustergrammer_py.Network method)</a>
</li>
<li><a href="clustergrammer_py.html#clustergrammer.Network.export_net_json">export_net_json() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.export_net_json">export_net_json() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>

<h2 id="F">F</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.filter_N_top">filter_N_top() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.filter_N_top">filter_N_top() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.filter_sum">filter_sum() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.filter_sum">filter_sum() (clustergrammer_py.Network method)</a>
</li>
<li><a href="clustergrammer_py.html#clustergrammer.Network.filter_threshold">filter_threshold() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.filter_threshold">filter_threshold() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>

<h2 id="L">L</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.load_data_file_to_net">load_data_file_to_net() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.load_data_file_to_net">load_data_file_to_net() (clustergrammer_py.Network method)</a>
</li>
<li><a href="clustergrammer_py.html#clustergrammer.Network.load_df">load_df() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.load_df">load_df() (clustergrammer_py.Network method)</a>
</li>
<li><a href="clustergrammer_py.html#clustergrammer.Network.load_file">load_file() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.load_file">load_file() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.load_stdin">load_stdin() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.load_stdin">load_stdin() (clustergrammer_py.Network method)</a>
</li>
<li><a href="clustergrammer_py.html#clustergrammer.Network.load_tsv_to_net">load_tsv_to_net() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.load_tsv_to_net">load_tsv_to_net() (clustergrammer_py.Network method)</a>
</li>
<li><a href="clustergrammer_py.html#clustergrammer.Network.load_vect_post_to_net">load_vect_post_to_net() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.load_vect_post_to_net">load_vect_post_to_net() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>

<h2 id="M">M</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.make_clust">make_clust() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.make_clust">make_clust() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>

<h2 id="N">N</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network">Network (class in clustergrammer)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network">Network (class in clustergrammer_py)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.normalize">normalize() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.normalize">normalize() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>

<h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.produce_view">produce_view() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.produce_view">produce_view() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>

<h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.reset">reset() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.reset">reset() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>

<h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.swap_nan_for_zero">swap_nan_for_zero() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>
Expand All @@ -304,7 +313,13 @@ <h2 id="U">U</h2>
<h2 id="W">W</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer.Network.widget">widget() (clustergrammer.Network method)</a>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.widget">widget() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.write_json_to_file">write_json_to_file() (clustergrammer_py.Network method)</a>
</li>
<li><a href="clustergrammer_py.html#clustergrammer_py.Network.write_matrix_to_tsv">write_matrix_to_tsv() (clustergrammer_py.Network method)</a>
</li>
</ul></td>
</tr></table>
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2 changes: 1 addition & 1 deletion docs/_build_html/py-modindex.html
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Expand Up @@ -159,7 +159,7 @@ <h1>Python Module Index</h1>
<tr>
<td></td>
<td>
<a href="clustergrammer_py.html#module-clustergrammer"><code class="xref">clustergrammer</code></a></td><td>
<a href="clustergrammer_py.html#module-clustergrammer_py"><code class="xref">clustergrammer_py</code></a></td><td>
<em></em></td></tr>
</table>

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2 changes: 1 addition & 1 deletion docs/clustergrammer_py.rst
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Expand Up @@ -55,7 +55,7 @@ Clustergrammer-PY generates a Network object (see `Network class definition`_),

When a matrix is loaded into an instance of ``Network`` (e.g. ``net``) it is stored in the data, ``dat``, attribute. Normalization and filtering will modify the ``dat`` representation of the matrix. When the matrix is clustered (by calling :ref:`make_clust`)

.. automodule:: clustergrammer
.. automodule:: clustergrammer_py

.. autoclass:: Network
:members:
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