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cornhundred committed Jul 15, 2019
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4 changes: 2 additions & 2 deletions docs/_build_html/_sources/clustergrammer2.rst.txt
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.. _clustergrammer2:

Clustergrammer2 Widget
------------------------
Clustergrammer2
---------------

Clustergrammer2 is the new in-development WegGL Jupyter Widget. This widget can visualize much larger datasets (matrices with ~millions of matrix-cells).

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5 changes: 2 additions & 3 deletions docs/_build_html/_sources/index.rst.txt
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Welcome to Clustergrammer's Documentation!
------------------------------------------
Clustergrammer is a web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable hierarchically clustered heatmaps (see :ref:`intro_heatmap_clustergram`). Clustergrammer's front end (:ref:`clustergrammer_js`) is built using `D3.js`_ and its back end (:ref:`clustergrammer_py`) is built using `Python`_. Clustergrammer produces highly interactive visualizations that enable intuitive exploration of high-dimensional data and has several optional biology-specific features (e.g. enrichment analysis; see :ref:`biology_specific_features`) to facilitate the exploration of gene-level biological data. The project is free and open-source and can be found on `GitHub`_.
Clustergrammer is a web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable hierarchically clustered heatmaps (see :ref:`intro_heatmap_clustergram`). Clustergrammer produces highly interactive visualizations that enable intuitive exploration of high-dimensional data and has several optional biology-specific features (e.g. enrichment analysis; see :ref:`biology_specific_features`) to facilitate the exploration of gene-level biological data. The project is free and open-source (all code is available on GitHub).

.. raw:: html

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getting_started
case_studies
clustergrammer_web
clustergrammer2
clustergrammer_web
interacting_with_viz
biology_specific_features
matrix_format_io
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.. _`Clustergrammer2-Examples`: https://github.com/ismms-himc/clustergrammer2-examples
.. _`Clustergrammer2`: https://github.com/ismms-himc/clustergrammer2
.. _`regl`: http://regl.party/
.. _`GitHub`: https://github.com/MaayanLab/clustergrammer
.. _`https://amp.pharm.mssm.edu/clustergrammer/`: https://amp.pharm.mssm.edu/clustergrammer/
.. _`D3.js`: https://d3js.org/
.. _`Python`: https://www.python.org/
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30 changes: 15 additions & 15 deletions docs/_build_html/clustergrammer2.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>Clustergrammer2 Widget &mdash; Clustergrammer 1.1.0 documentation</title>
<title>Clustergrammer2 &mdash; Clustergrammer 1.1.0 documentation</title>



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<link rel="stylesheet" href="https://unpkg.com/font-awesome@4.5.0/css/font-awesome.min.css" type="text/css" />
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Case Studies and Tutorials" href="case_studies.html" />
<link rel="prev" title="Clustergrammer Web App" href="clustergrammer_web.html" />
<link rel="next" title="Interacting with the Visualization" href="interacting_with_viz.html" />
<link rel="prev" title="Clustergrammer-Web" href="clustergrammer_web.html" />


<script src="_static/js/modernizr.min.js"></script>
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<ul class="current">
<li class="toctree-l1"><a class="reference internal" href="getting_started.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer_web.html">Clustergrammer Web App</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Clustergrammer2 Widget</a><ul>
<li class="toctree-l1"><a class="reference internal" href="case_studies.html">Case Studies and Tutorials</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer_web.html">Clustergrammer-Web</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Clustergrammer2</a><ul>
<li class="toctree-l2"><a class="reference internal" href="#clustergrammer2-widget-development">Clustergrammer2 Widget Development</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="case_studies.html">Case Studies and Tutorials</a></li>
<li class="toctree-l1"><a class="reference internal" href="interacting_with_viz.html">Interacting with the Visualization</a></li>
<li class="toctree-l1"><a class="reference internal" href="biology_specific_features.html">Biology-Specific Features</a></li>
<li class="toctree-l1"><a class="reference internal" href="matrix_format_io.html">Matrix Formats and Input/Output</a></li>
<li class="toctree-l1"><a class="reference internal" href="building_webpage.html">Web-Development with Clustergrammer</a></li>
<li class="toctree-l1"><a class="reference internal" href="building_webpage.html">Web-Development</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer_widget.html">Clustergrammer-Widget</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer_js.html">Clustergrammer-JS</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer_gl.html">Clustergrammer-GL</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer_py.html">Clustergrammer-PY</a></li>
<li class="toctree-l1"><a class="reference internal" href="app_integration.html">App Integration Examples</a></li>
<li class="toctree-l1"><a class="reference internal" href="developing_with_clustergrammer.html">Developing Clustergrammer</a></li>
<li class="toctree-l1"><a class="reference internal" href="app_integration.html">App Integrations</a></li>
<li class="toctree-l1"><a class="reference internal" href="developing_with_clustergrammer.html">Developing</a></li>
<li class="toctree-l1"><a class="reference internal" href="license.html">License</a></li>
</ul>

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<li><a href="index.html">Docs</a> &raquo;</li>

<li>Clustergrammer2 Widget</li>
<li>Clustergrammer2</li>


<li class="wy-breadcrumbs-aside">
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<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody">

<div class="section" id="clustergrammer2-widget">
<span id="clustergrammer2"></span><h1>Clustergrammer2 Widget<a class="headerlink" href="#clustergrammer2-widget" title="Permalink to this headline"></a></h1>
<div class="section" id="clustergrammer2">
<span id="id1"></span><h1>Clustergrammer2<a class="headerlink" href="#clustergrammer2" title="Permalink to this headline"></a></h1>
<p>Clustergrammer2 is the new in-development WegGL Jupyter Widget. This widget can visualize much larger datasets (matrices with ~millions of matrix-cells).</p>
<p>Clustergrammer2 is being built using the WebGL library <a class="reference external" href="http://regl.party/">regl</a>, is free and open-source, and can be found on <a class="reference external" href="https://github.com/ismms-himc/clustergrammer2">GitHub</a>.</p>
<div class="figure align-left">
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<div class="section" id="clustergrammer2-widget-development">
<span id="clustergrammer2-dev"></span><h2>Clustergrammer2 Widget Development<a class="headerlink" href="#clustergrammer2-widget-development" title="Permalink to this headline"></a></h2>
<p>Clustergrammer2’s source code can be found in the <a class="reference external" href="https://github.com/ismms-himc/clustergrammer2">Clustergrammer2 GitHub repo</a>. Clustergrammer2 is built using the jupyter-widgets framework (using the <a class="reference external" href="https://github.com/jupyter-widgets/widget-ts-cookiecutter">cookie cutter</a> template).</p>
<p>Please <a class="reference internal" href="index.html#contact"><span class="std std-ref">Contact</span></a> Nicolas Fernandez and Avi Ma’ayan with questions or use the GitHub <a href="#id1"><span class="problematic" id="id2">`issues`_</span></a> feature to report an issue.</p>
<p>Please <a class="reference internal" href="index.html#contact"><span class="std std-ref">Contact</span></a> Nicolas Fernandez and Avi Ma’ayan with questions or use the GitHub <a href="#id2"><span class="problematic" id="id3">`issues`_</span></a> feature to report an issue.</p>
</div>
</div>

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<div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">

<a href="case_studies.html" class="btn btn-neutral float-right" title="Case Studies and Tutorials" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
<a href="interacting_with_viz.html" class="btn btn-neutral float-right" title="Interacting with the Visualization" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>


<a href="clustergrammer_web.html" class="btn btn-neutral" title="Clustergrammer Web App" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
<a href="clustergrammer_web.html" class="btn btn-neutral" title="Clustergrammer-Web" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>

</div>

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2 changes: 1 addition & 1 deletion docs/_build_html/genindex.html
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<ul>
<li class="toctree-l1"><a class="reference internal" href="getting_started.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="case_studies.html">Case Studies and Tutorials</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer2.html">Clustergrammer2</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer_web.html">Clustergrammer-Web</a></li>
<li class="toctree-l1"><a class="reference internal" href="clustergrammer2.html">Clustergrammer2 Widget</a></li>
<li class="toctree-l1"><a class="reference internal" href="interacting_with_viz.html">Interacting with the Visualization</a></li>
<li class="toctree-l1"><a class="reference internal" href="biology_specific_features.html">Biology-Specific Features</a></li>
<li class="toctree-l1"><a class="reference internal" href="matrix_format_io.html">Matrix Formats and Input/Output</a></li>
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