CI: Use mamba-org/setup-micromamba@v1 action (#775)

corteva · May 10, 2024 · 332f4d6 · 332f4d6
1 parent 13a3a99
commit 332f4d6
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diff --git a/.github/workflows/build_docs.yaml b/.github/workflows/build_docs.yaml
@@ -21,21 +21,24 @@ jobs:
           persist-credentials: false
 
       - name: Setup Conda
-        uses: s-weigand/setup-conda@v1
+        uses: mamba-org/setup-micromamba@v1
         with:
-          python-version: '3.10'
-          conda-channels: conda-forge
+          init-shell: bash
+          environment-name: docs
+          create-args: >-
+            python=3.10
+            rasterio
+            xarray
+            scipy
+            pyproj
+            pandoc
 
       - name: Install and Build
         shell: bash
         run: |
-          conda config --prepend channels conda-forge
-          conda config --set channel_priority strict
-          conda create -n docs python=3.10 rasterio xarray scipy pyproj pandoc
-          source activate docs
-          python -m pip install -e .[all]
-          python -m pip install -r requirements/doc.txt
-          sphinx-build -b html docs/ docs/_build/
+          micromamba run -n docs python -m pip install -e .[all]
+          micromamba run -n docs python -m pip install -r requirements/doc.txt
+          micromamba run -n docs sphinx-build -b html docs/ docs/_build/
 
       - name: Deploy 🚀
         uses: JamesIves/github-pages-deploy-action@v4

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
@@ -105,57 +105,55 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Setup Conda
-        uses: s-weigand/setup-conda@v1
+        uses: mamba-org/setup-micromamba@v1
         with:
-          python-version: ${{ matrix.python-version }}
-          conda-channels: conda-forge
+          init-shell: bash
+          environment-name: test
+          create-args: >-
+            python=${{ matrix.python-version }}
+            rasterio=${{ matrix.rasterio-version }}
+            xarray=${{ matrix.xarray-version }}
+            pyproj
+            netcdf4
+            dask
+            pandoc
 
       - name: Install Env
         shell: bash
         run: |
-          conda config --prepend channels conda-forge
-          conda config --set channel_priority strict
-          export INSTALL_DEPS='python=${{ matrix.python-version }} rasterio=${{ matrix.rasterio-version }} xarray=${{ matrix.xarray-version }} pyproj netcdf4 dask pandoc'
-          [ "${{ matrix.run-with-scipy }}" = "YES" ] && export INSTALL_DEPS="${INSTALL_DEPS} scipy"
-          conda create -n test $INSTALL_DEPS
-          source activate test
-          python -m pip install -e .[all]
-          python -m pip install -r requirements/dev.txt
+          [ "${{ matrix.run-with-scipy }}" = "YES" ] && micromamba install -n test scipy
+          micromamba run -n test python -m pip install -e .[all]
+          micromamba run -n test python -m pip install -r requirements/dev.txt
 
       - name: Check and Log Environment
         shell: bash
         run: |
-          source activate test
-          python -V
-          python -c "import rioxarray; rioxarray.show_versions();"
-          conda info
+          micromamba run -n test python -V
+          micromamba run -n test python -c "import rioxarray; rioxarray.show_versions();"
+          micromamba info
 
       - name: pylint
         if: matrix.python-version == '3.10'
         shell: bash
         run: |
-          source activate test
-          pylint rioxarray/
+          micromamba run -n test pylint rioxarray/
 
       - name: mypy
         shell: bash
         if: matrix.python-version == '3.10'
         run: |
-          source activate test
-          mypy rioxarray/
+          micromamba run -n test mypy rioxarray/
 
       - name: Test
         shell: bash
         run: |
-          source activate test
-          pytest --cov-report term-missing --cov=rioxarray --cov-report xml
+          micromamba run -n test pytest --cov-report term-missing --cov=rioxarray --cov-report xml
 
       - name: Test Build docs
         shell: bash
         if: contains(matrix.os, 'ubuntu')
         run: |
-          source activate test
-          sphinx-build -b html docs/ docs/_build/
+          micromamba run -n test sphinx-build -b html docs/ docs/_build/
 
       - uses: codecov/codecov-action@v4
 
@@ -168,25 +166,27 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Setup Conda
-        uses: s-weigand/setup-conda@v1
+        uses: mamba-org/setup-micromamba@v1
         with:
-          python-version: '3.10'
-          conda-channels: conda-forge
+          init-shell: bash
+          environment-name: test
+          create-args: >-
+            python=3.10
+            proj
+            libgdal
+            cython
+            netcdf4
 
       - name: Install Env
         shell: bash
         run: |
-          conda config --prepend channels conda-forge
-          conda config --set channel_priority strict
-          conda create -n test python=3.10 proj libgdal cython netcdf4
-          source activate test
-          python -m pip install \
+          micromamba run -n test python -m pip install \
             --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple \
             --no-deps --pre --upgrade \
             numpy \
             pandas \
             scipy;
-          python -m pip install --upgrade \
+          micromamba run -n test python -m pip install --upgrade \
             git+https://github.com/dask/dask.git@main \
             git+https://github.com/dask/distributed.git@main \
             git+https://github.com/mapbox/rasterio.git@main \
@@ -198,13 +198,11 @@ jobs:
       - name: Check and Log Environment
         shell: bash
         run: |
-          source activate test
-          python -V
-          python -c "import rioxarray; rioxarray.show_versions();"
-          conda info
+          micromamba run -n test python -V
+          micromamba run -n test python -c "import rioxarray; rioxarray.show_versions();"
+          micromamba info
 
       - name: Test
         shell: bash
         run: |
-          source activate test
-          pytest --cov-report term-missing --cov=rioxarray --cov-report xml
+          micromamba run -n test pytest --cov-report term-missing --cov=rioxarray --cov-report xml