fleshed out code deploy, Dockerfile test

cortex-lab · Apr 12, 2022 · dce1c5f · dce1c5f
1 parent d69869e
commit dce1c5f
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Showing 2 changed files with 41 additions and 16 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -11,11 +11,11 @@ on:
       - dev
 
 jobs:
-  run_tests:
+  run_jobs:
     runs-on: ubuntu-latest
     services:
       postgres:
-        image: postgres
+        image: postgres:13
         env:
           POSTGRES_PASSWORD: postgres
           POSTGRES_USER: postgres
@@ -36,7 +36,7 @@ jobs:
         uses: actions/setup-python@v2
         with:
           python-version: '3.8'
-      - name: Install dependecies
+      - name: Install python dependecies
         run: |
           python -m pip install --upgrade pip
           pip install -r requirements.txt
@@ -45,8 +45,8 @@ jobs:
           PIP_USE_MIRRORS: true
       - name: Run tests
         run: |
-          sudo touch /var/log/alyx.log; sudo chmod 776 /var/log/alyx.log
-          sudo touch /var/log/alyx_json.log; sudo chmod 776 /var/log/alyx_json.log
+          sudo touch /var/log/alyx.log; sudo chmod 666 /var/log/alyx.log
+          sudo touch /var/log/alyx_json.log; sudo chmod 666 /var/log/alyx_json.log
           cd alyx
           mv alyx/settings_ci.py alyx/settings.py
           coverage run manage.py test -n
@@ -59,20 +59,45 @@ jobs:
         run: |
           cd alyx
           flake8 .
-  build:
-    runs-on: ubuntu-latest
-    if: ${{ github.ref == 'refs/heads/master' }}
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v2
-      - name: Login to Docker Hub
+      - name: Generate pip freeze requirements.txt
+        run: |
+          pip freeze > requirements_frozen.txt
+          echo ">>> Contents of requirements_frozen.txt <<<"
+          cat requirements_frozen.txt
+      - name: Copy files to S3
+        shell: bash
+        env:
+          aws_key_id: ${{ secrets.AWS_ACCESS_KEY_ID }}
+          aws_secret_access_key: ${{ secrets.AWS_SECRET_KEY_ID }}
+          aws_s3_bucket: ${{ secrets.AWS_S3BUCKET_NAME }}
+          aws_region: ${{ secrets.AWS_REGION }}
+        run: |
+          sudo apt-get update && sudo apt-get -y install awscli
+          aws configure set aws_access_key_id $aws_key_id
+          aws configure set aws_secret_access_key $aws_secret_access_key 
+          aws configure set default.region $aws_region
+          aws s3 cp requirements_frozen.txt s3://$aws_s3_bucket/github_actions/
+          echo "The current directory: "
+          pwd
+          echo "Files in scripts dir: "
+          ls scripts
+          echo "Files in scrips/deployment_examples dir: "
+          ls scripts/deployment_examples
+          aws s3 cp scripts/deployment_examples/alyx-docker/000-default-conf-alyx-dev s3://$aws_s3_bucket/github_actions/
+#          aws s3 cp scripts/deployment_examples/alyx-docker/apache-conf* s3://$aws_s3_bucket/github_actions/
+#          aws s3 cp scripts/deployment_examples/alyx-docker/cloudwatch_config.json* s3://$aws_s3_bucket/github_actions/
+#          aws s3 cp scripts/deployment_examples/alyx-docker/Dockerfile.ibl s3://$aws_s3_bucket/github_actions/
+      - name: Configure Docker login
+        if: ${{ github.ref == 'refs/heads/master' }}
         uses: docker/login-action@v1
         with:
           username: ${{ secrets.DOCKER_HUB_USERNAME }}
           password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
       - name: Set up Docker Buildx
+        if: ${{ github.ref == 'refs/heads/master' }}
         uses: docker/setup-buildx-action@v1
-      - name: Build and push
+      - name: Build and push Docker base image
+        if: ${{ github.ref == 'refs/heads/master' }}
         uses: docker/build-push-action@v2
         with:
           context: .

diff --git a/scripts/deployment_examples/alyx-docker/Dockerfile.base b/scripts/deployment_examples/alyx-docker/Dockerfile.base
@@ -18,13 +18,13 @@ RUN apt-get update && apt-get install -y \
     && apt-get autoremove \
     && rm -rf /var/lib/apt/lists/*
 
-# Clone repo and configure virtual environment
-RUN git clone --branch master https://github.com/cortex-lab/alyx.git /var/www/alyx
+# Clone repo and configure virtual environment (not required when building with github actions?)
+# RUN git clone --branch master https://github.com/cortex-lab/alyx.git /var/www/alyx
 # Best practice for configuring python venv
 ENV VIRTUAL_ENV=/var/www/alyx/venv
 RUN virtualenv ${VIRTUAL_ENV} --python=python3
 ENV PATH="$VIRTUAL_ENV/bin:$PATH"
 WORKDIR /var/www/alyx
-RUN pip install -r requirements.txt
+RUN pip install -r requirements_frozen.txt
 WORKDIR /var/www/alyx/alyx
 RUN pip install ONE-api