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Stuck on Adding default color schemes to TraceView. #1286
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Downgrading to which numpy and which python version? |
Could you try reinstalling with a numpy limit in the yaml file. I wonder if the pickle and numpy are out of sync because of just downgrading rather than installing at the beginning. Sometimes pip-conda messes these things up. To be clear: in the file do name: phy2
channels:
- conda-forge
- defaults
dependencies:
- python=3.11
- pip
- git
- numpy<2.0
- matplotlib
- scipy
- h5py
- pyqt
- pyopengl
- pyqtwebengine
- pytest
- qtconsole
- requests
- responses
- traitlets
- dask
- cython
- pillow
- scikit-learn
- joblib
- pip:
- git+https://github.com/cortex-lab/phy.git |
wonderful. The risks of pip + conda. haha. Have a nice day! |
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Hello,
![image](https://private-user-images.githubusercontent.com/145394734/341551341-a7c9df6d-420f-4ee6-90b0-c03f2c5a59e0.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MjQyMzkxMzcsIm5iZiI6MTcyNDIzODgzNywicGF0aCI6Ii8xNDUzOTQ3MzQvMzQxNTUxMzQxLWE3YzlkZjZkLTQyMGYtNGVlNi05MGIwLWMwM2YyYzVhNTllMC5wbmc_WC1BbXotQWxnb3JpdGhtPUFXUzQtSE1BQy1TSEEyNTYmWC1BbXotQ3JlZGVudGlhbD1BS0lBVkNPRFlMU0E1M1BRSzRaQSUyRjIwMjQwODIxJTJGdXMtZWFzdC0xJTJGczMlMkZhd3M0X3JlcXVlc3QmWC1BbXotRGF0ZT0yMDI0MDgyMVQxMTEzNTdaJlgtQW16LUV4cGlyZXM9MzAwJlgtQW16LVNpZ25hdHVyZT03MmUwOWMxMTU2OWRhZjY1NTNmMjM2MmM2MTcyZTA1MTA3ZjBlZmJkYjllZDFkYTBjYjJjYTdlMGQ2MDNlYjQxJlgtQW16LVNpZ25lZEhlYWRlcnM9aG9zdCZhY3Rvcl9pZD0wJmtleV9pZD0wJnJlcG9faWQ9MCJ9.pTJq7RsMv6KoeZWS_hT6KQrP1GDGYcB3917O7PT40a8)
![image](https://private-user-images.githubusercontent.com/145394734/341553880-326a74c3-1f0e-4023-afed-332aea641a46.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MjQyMzkxMzcsIm5iZiI6MTcyNDIzODgzNywicGF0aCI6Ii8xNDUzOTQ3MzQvMzQxNTUzODgwLTMyNmE3NGMzLTFmMGUtNDAyMy1hZmVkLTMzMmFlYTY0MWE0Ni5wbmc_WC1BbXotQWxnb3JpdGhtPUFXUzQtSE1BQy1TSEEyNTYmWC1BbXotQ3JlZGVudGlhbD1BS0lBVkNPRFlMU0E1M1BRSzRaQSUyRjIwMjQwODIxJTJGdXMtZWFzdC0xJTJGczMlMkZhd3M0X3JlcXVlc3QmWC1BbXotRGF0ZT0yMDI0MDgyMVQxMTEzNTdaJlgtQW16LUV4cGlyZXM9MzAwJlgtQW16LVNpZ25hdHVyZT1lMTljZGE4YmQyNWQzY2YzYmM4MjJjNDU1ZjYyM2Q2NTA5YTM4MjhmOGY0NjkyMTgyZTk3ZmE5MTIyNjQ5ZTU1JlgtQW16LVNpZ25lZEhlYWRlcnM9aG9zdCZhY3Rvcl9pZD0wJmtleV9pZD0wJnJlcG9faWQ9MCJ9.KqgeLSmSVntvwjOG26dYQ_BOiJk3xqHPtAXYm5uhpFE)
![image](https://private-user-images.githubusercontent.com/145394734/341554426-ef1789d6-a398-4be2-940f-35ba8a3342cc.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MjQyMzkxMzcsIm5iZiI6MTcyNDIzODgzNywicGF0aCI6Ii8xNDUzOTQ3MzQvMzQxNTU0NDI2LWVmMTc4OWQ2LWEzOTgtNGJlMi05NDBmLTM1YmE4YTMzNDJjYy5wbmc_WC1BbXotQWxnb3JpdGhtPUFXUzQtSE1BQy1TSEEyNTYmWC1BbXotQ3JlZGVudGlhbD1BS0lBVkNPRFlMU0E1M1BRSzRaQSUyRjIwMjQwODIxJTJGdXMtZWFzdC0xJTJGczMlMkZhd3M0X3JlcXVlc3QmWC1BbXotRGF0ZT0yMDI0MDgyMVQxMTEzNTdaJlgtQW16LUV4cGlyZXM9MzAwJlgtQW16LVNpZ25hdHVyZT1iMzJkNTlhZmVlZDcwZmUyNjk0OWI2NmIzZGYxMGEyYWNkNzgyNjhlNDE3YWE5Y2QxMWNlYjQ2NjlhZDA0YjZjJlgtQW16LVNpZ25lZEhlYWRlcnM9aG9zdCZhY3Rvcl9pZD0wJmtleV9pZD0wJnJlcG9faWQ9MCJ9.YLUeJZ-eFwP9P72OcU7yt1-Mm0zV7yt00FImd5DigtM)
I have created the environment using "environment.yml".
The data I'm trying to visualize is from Kilosort/docs/tutorials/basic_example.ipynb (ZFM-02370_mini.imec0.ap.bin).
I fed that data to the kilosort GUI, and got some results:
Running the phy template-gui params.py gives me an error:
Downgrading numpy didn't help. So instead, I changed that line of code as suggested in the error. Running the gui again, this time I get this:
It has been stuck on the last line.
I appreciate any help.
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