fstring mod

cov-lineages · Apr 17, 2024 · cb23a4d · cb23a4d
1 parent 7eb6a6c
commit cb23a4d
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/hedgehog/scripts/hedge_lineage_set.smk b/hedgehog/scripts/hedge_lineage_set.smk
@@ -119,9 +119,8 @@ rule add_failed_seqs:
             note = "Assigned from designation hash."
             for row in reader:
                 this_set_info = set_info[row["set_hash"]]
-                fw.write(f"{row['taxon']},{row["set_hash"][:6]},{row["set_hash"]},{this_set_info['precision']},{this_set_info['set_description']},{this_set_info['lineage_count']},{this_set_info['spike_constellation']},NA,NA,,{config['hedgehog_version']},{config['pango_version']},passed_qc,{note}\n")
-
-
+                fw.write(f"{row['taxon']},{row['set_hash'][:6]},{row['set_hash']},{this_set_info['precision']},{this_set_info['set_description']},{this_set_info['lineage_count']},{this_set_info['spike_constellation']},NA,NA,,{config['hedgehog_version']},{config['pango_version']},passed_qc,{note}\n")
+
         with open(input.qcpass, "r") as f:
             reader = csv.DictReader(f)