Skip to content

Commit

Permalink
Specify nuc mutations for S:F456L in lineage notes (there are 3 options)
Browse files Browse the repository at this point in the history
  • Loading branch information
corneliusroemer committed May 30, 2023
1 parent c9a4315 commit 27fc997
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions lineage_notes.txt
Expand Up @@ -2631,7 +2631,7 @@ XBB.1.5.7 USA, ORF1b:V248F
EM.1 Alias of XBB.1.5.7.1, UK, S:R214L
XBB.1.5.8 USA, N:R10Q
XBB.1.5.9 USA, N:S327L
XBB.1.5.10 USA-NC, S:F456L, from #1614
XBB.1.5.10 S:F456L (T22928C), USA-NC from #1614
XBB.1.5.11 ORF1a:G401S
XBB.1.5.12 S:T323I
XBB.1.5.13 T21880C, G28079T
Expand All @@ -2644,7 +2644,7 @@ XBB.1.5.14 C2695T, Europe/US
EL.1 Alias of XBB.1.5.14.1, S:Q675H, Europe, from #1631
XBB.1.5.15 G15957T, USA
FD.1 Alias of XBB.1.5.15.1, ORF7b:E3*, England/Canada
FD.1.1 Alias of XBB.1.5.15.1.1, S:F456L, Canada-QC
FD.1.1 Alias of XBB.1.5.15.1.1, S:F456L (T22928C), Canada-QC
FD.2 Alias of XBB.1.5.15.2, S:Q146K, ORF1a:G519S, USA, from #1600
FD.3 Alias of XBB.1.5.15.3, S:A348S, T8503C, USA/Finland/Japan
FD.4 Alias of XBB.1.5.15.4, ORF1a:L4191F, USA
Expand Down Expand Up @@ -2707,7 +2707,7 @@ XBB.1.5.55 ORF1a:T3356I, USA/Canada
XBB.1.5.56 S:A852S, USA
XBB.1.5.57 A20379G, C28312T, pre-T17124C, probable Spike-donor of XBL, #1973
XBB.1.5.58 S:704L, ORF1b:V1607I, ORF6:D6G, Guinea, from #1860
XBB.1.5.59 S:F456L, ORF1a:S2822P, England, from #1949
XBB.1.5.59 S:F456L (T22928C), ORF1a:S2822P, England, from #1949
XBB.1.5.60 S:M177I, ORF1a:T2106I, S:Q146K, Netherlands/Germany
XBB.1.5.61 T11536C, USA
XBB.1.5.62 C29095T
Expand All @@ -2718,7 +2718,7 @@ XBB.1.5.66 ORF1a:G519S, USA
XBB.1.5.67 C21691T, USA
XBB.1.5.68 S:P521T, ORF3a:L71I, C18501T, USA
XBB.1.5.69 ORF1a:V2943I,C22513T, USA
XBB.1.5.70 Defined by ORF1a:A4068S S:L455F and S:F456L, found mainly in Brazil and USA, from pango-designation issue #1982
XBB.1.5.70 Defined by ORF1a:A4068S S:L455F and S:F456L (T22928C), found mainly in Brazil and USA, from pango-designation issue #1982
XBB.1.5.71 S:V511I, Spain
XBB.1.6 USA, S:L216F, S:H146K, from issue #1428
XBB.1.7 USA-NY, S:V608I
Expand Down Expand Up @@ -2763,7 +2763,7 @@ EG.1.4 Alias of XBB.1.9.2.1.4, ORF1a:S2500F, Europe
EG.2 Alias of XBB.1.9.2.2, S:478R, Indonesia
EG.3 Alias of XBB.1.9.2.3, ORF1a:L2778F on N:L219F branch
EG.4 Alias of XBB.1.9.2.4, C28651T
EG.5 Alias of XBB.1.9.2.5, S:F456L, ORF1a:A690V, ORF1a:A3143V, Indonesia
EG.5 Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indonesia
EG.5.1 Alias of XBB.1.9.2.5.1, S:Q52H, China
EG.5.2 Alias of XBB.1.9.2.5.2, N:L161F
EG.6 Alias of XBB.1.9.2.6, C1684T, Israel
Expand Down Expand Up @@ -2805,7 +2805,7 @@ GA.3 Alias of XBB.1.17.1.3, ORF1b:A186V, Ghana
XBB.1.17.2 Defined by ORF1a:A698S, Russia, from issue #1712
XBB.1.18 Defined by A8001G, Brazil
XBB.1.18.1 Defined by S:F486P, Brazil
FE.1 Alias of XBB.1.18.1.1, S:F456L, Brazil/Chile
FE.1 Alias of XBB.1.18.1.1, S:F456L (T22928C), Brazil/Chile
FE.1.1 Alias of XBB.1.18.1.1.1, ORF8:S67F, T4579A
FE.1.2 Alias of XBB.1.18.1.1.2, A5488G
XBB.1.19 Defined by S:486P, C541T, A10042G, T21363C, pre ORF8:8*, Pakistan, from #1680
Expand Down

0 comments on commit 27fc997

Please sign in to comment.