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Designate XBB.1.5.92 (ORF1a:T1168I, Ecuador) with 150 seqs
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@corneliusroemer
corneliusroemer committed Jul 11, 2023
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153 changes: 152 additions & 1 deletion lineages.csv
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@FedeGueli
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@corneliusroemer @AngieHinrichs please read the discussion in this comment and below (i am adding a new comment there) : sars-cov-2-variants/lineage-proposals#362 (comment) There are at least three ecuadorean sublineage of XBB.1.5 with Orf1a:T1168I :
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The one designated here is the one with the main sublineage with Orf1a:L3829F proposed in sars-cov-2-variants/lineage-proposals#362 :
I think Angie fixed the flip flop thing that was highlighted in the issue
Schermata 2023-07-15 alle 13 19 53
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice2_genome_1007a_27cc00.json?c=gt-nuc_823&label=id:node_7037790
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Another XBB.1.5 with C823T and then Orf1a:T1168I that acquired S:E554K ( proposed in sars-cov-2-variants/lineage-proposals#170 ) that ctually could be one of the fastest lineages at least in South America
Schermata 2023-07-15 alle 13 23 32
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1007a_27cbf0.json?label=id:node_6889930
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a small unproposed lineage in a flip flop branch with S:W258C>W that further acquired three key NTD mutations:
Schermata 2023-07-15 alle 13 24 45
Schermata 2023-07-15 alle 13 25 08
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice3_genome_1007a_27cc00.json?c=userOrOld&label=id:node_6936104

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