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Designate JD.1 (XBB.1.5.102, S:L455F, S:F456L (T22928C), A14634G, T28…
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…282C, Brazil, from #2203) with 60 seqs

Resolves #2203
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corneliusroemer committed Aug 22, 2023
1 parent 688cb33 commit 9953957
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Showing 3 changed files with 63 additions and 61 deletions.
1 change: 1 addition & 0 deletions lineage_notes.txt
122 changes: 61 additions & 61 deletions lineages.csv
1 change: 1 addition & 0 deletions pango_designation/alias_key.json

4 comments on commit 9953957

@FedeGueli
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PR to correct the issue it is from #2071

@Over-There-Is
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But there is still a typo, It should be XBB.1.5.102.1

@FedeGueli
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But there is still a typo, It should be XBB.1.5.102.1

thank you i have issued a PR correcting it

@FedeGueli
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I want to highlight here that all the JD* clan has also T28282C which is directly in the Kozak Sequence of Orf9B:
Schermata 2023-08-25 alle 22 26 38
Kozak sequence is the OPTIMUM sequence preceding (&Following) the Start Codon enhancing (the more is similar to the Kozak sequence) or reducing (the less is similar to the ideal sequence) the initiating translation :
Schermata 2023-08-25 alle 22 27 17

So the T28282C greatly improve the Kozak Sequence of Orf9b in all JD. lineages:
Schermata 2023-08-25 alle 22 32 05

Tree from @ryhisner
Kozak : credit to @thomaspeacock and @ryhisner who opened this world to me.

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