Skip to content

Commit

Permalink
Designate XBB.1.5.73 (T28271C, USA/Peru) with 600 seqs
Browse files Browse the repository at this point in the history
  • Loading branch information
@corneliusroemer
corneliusroemer committed Jun 1, 2023
1 parent 4164f55 commit a3e16cb
Show file tree
Hide file tree
Showing 2 changed files with 685 additions and 7 deletions.
1 change: 1 addition & 0 deletions lineage_notes.txt
View file
691 changes: 684 additions & 7 deletions lineages.csv
View file

1 comment on commit a3e16cb

@FedeGueli
Copy link
Contributor

@FedeGueli FedeGueli commented on a3e16cb Jul 10, 2023 •
edited

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I think there are a couple of branches of 28271C + 486P misplaced by Usher for a bunch of old singlets please take a look:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_880c_c34d00.json?label=id:node_6753588
Schermata 2023-07-10 alle 18 58 30

while in the XBB.1.5.73 tree there is a lineage with the same nuc of the one on the top misplaced:
Schermata 2023-07-10 alle 19 00 24
C12669T
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_42faf_c312c0.json?c=gt-nuc_12669&label=id:node_6909459

For the bottom one i have just the geographical evidence that both emerged in Peru'

CC @AngieHinrichs

Please sign in to comment.