BA.5.2.21 + orf1b:1050N sublineage with S:N450D (89 Sequences) and its sublineage with S:G252S circulating in Denmark (6 sequences)

[FedeGueli]

Defining mutations:
C5284T, A22910G, C25626T, C27012T + S:N450D

Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_9132_f6da70.json?branchLabel=aa%20mutations&c=pango_lineage_usher&label=nuc%20mutations:C25626T

First sequence: EPI_ISL_14541309|2022-08-04 from Japan
Nr of sequences: 18
EPI_ISL_14718521
EPI_ISL_15044951
EPI_ISL_14774478
EPI_ISL_14541309
EPI_ISL_15061381
EPI_ISL_15037606
EPI_ISL_14717216
EPI_ISL_15037081
EPI_ISL_14950369
EPI_ISL_15015737
EPI_ISL_14808315
EPI_ISL_14995495
EPI_ISL_14822622

Countries:

Covspectrum query: C5284T, A22910G, C25626T, C27012T + S:N450D

https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?aaMutations=S%3AN450D&nucMutations=C5284T%2CA22910G%2CC25626T%2CC27012T&

EDITED

Digging a bit in this lineage i found 5 very recent uploads from Denmark belonging to this lineage which have acquired another NTD mutation S:G252S and Orf3a:A110S and nuc: T15930C

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_13494_f73390.json?branchLabel=aa%20mutations&c=pango_lineage_usher&label=nuc%20mutations:C25626T

To track this last one the Gisaid query is : NSP13_T127N,Spike_G252S,Spike_N450D

Covspectrum for this last danish sublineage: https://cov-spectrum.org/explore/World/AllSamples/Past2M/variants?aaMutations=S%3AG252S%2COrf3a%3AA110S&nucMutations=T15930C&

[FedeGueli]

30 sequences as today of this lineage on CovSpectrum

[FedeGueli]

89 sequences as today on Usher:

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_766b_5e0880.json?branchLabel=aa%20mutations&c=pango_lineage_usher&label=nuc%20mutations:A22910G