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Fast growing DY.1 sublineage with S:K147E emerged in Yunnan (36 sequences) #1599

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FedeGueli opened this issue Jan 30, 2023 · 2 comments
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@FedeGueli
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I was awaiting the designation of DY.1 to propose this sublineage of it with S:K147E .

Defining mutations: DY.1 > Orf1a:M315V (A1208G),Orf1b:T1637I C18377T, S:K147E (A22001G)

Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2825e_844360.json?c=userOrOld&label=id:node_7482315
Schermata 2023-01-30 alle 23 49 23

Gisaid query: Spike_K147E,Spike_A570S,M_D3N

Sequences: 36
EPI_ISL_16334622, EPI_ISL_16355494, EPI_ISL_16377971,
EPI_ISL_16561148, EPI_ISL_16604910, EPI_ISL_16610765,
EPI_ISL_16610778, EPI_ISL_16610866, EPI_ISL_16610869,
EPI_ISL_16635615, EPI_ISL_16635972, EPI_ISL_16641629,
EPI_ISL_16641640, EPI_ISL_16641645, EPI_ISL_16641647,
EPI_ISL_16641651, EPI_ISL_16641656, EPI_ISL_16641665,
EPI_ISL_16641672, EPI_ISL_16641678, EPI_ISL_16646032,
EPI_ISL_16646048, EPI_ISL_16646050-16646051, EPI_ISL_16646058-16646059,
EPI_ISL_16646061-16646063, EPI_ISL_16646065-16646066, EPI_ISL_16646068,
EPI_ISL_16646087, EPI_ISL_16709101, EPI_ISL_16719084,
EPI_ISL_16723086

This lineage was also independently spotted by @real_Fearuncle (here)

@HynnSpylor
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great proposal! I am also tracking this sublineage. Maybe more seqs in next few days.
QQ截图20230131115238

@FedeGueli FedeGueli changed the title Fast growing DY.1 sublineage with S:K147E emerged in Yunnan (36 seqences) Fast growing DY.1 sublineage with S:K147E emerged in Yunnan (36 sequences) Jan 31, 2023
@InfrPopGen InfrPopGen self-assigned this Jan 31, 2023
InfrPopGen added a commit that referenced this issue Jan 31, 2023
Added new lineage DY.1.1 from #1599 with 0 new sequence designations, and 9 updated from DY.1
@InfrPopGen InfrPopGen added this to the DY.1.1 milestone Jan 31, 2023
@InfrPopGen
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Thanks for submitting. We've added lineage DY.1.1 with 0 newly designated sequences, and 9 updated from DY.1. Defining mutations A1208G (ORF1a:M315V), C18377T (ORF1b:T1637I), A22001G (S:K147E) (following G23270T (S:A570S)).

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