Brazilian XBB.1.18.1 lineage with mutations S:F456L and NSP3:S1007N

[larboh-ioc]

By Rede Genômica Fiocruz

Description:

We found a highly supported (aLRT = 93) clade within lineage XBB.1.18.1 (n = 83) harboring mutations S:F456L and NSP3:S1007N, mostly from Brazil (n = 77, 93%).

This clade branch independently of lineage FE.1 that also evolved from the XBB.1.18.1 precursor by acquiring the mutation S:F456L.

Defining mutations: S:F456L and NSP3:S1007N
Gisaid query: S:F456L and NSP3:S1007N

Earliest sequence: EPI_ISL_17560653, Brazil 2023-02-13
Latest sequence: EPI_ISL_18044728, Brazil 2023-07-16

Lineage Collection:

EPI_SET ID: EPI_SET_230828nd
doi: 10.55876/gis8.230828nd

Tree:

[FedeGueli]

Thank you this was proposed alreay one month ago here: sars-cov-2-variants/lineage-proposals#500 bu i'll close mine to keep your one open , being you the scientists on the battlefield.

@corneliusroemer please take this one as reference.

[FedeGueli]

cc @AngieHinrichs this is the same lineage we wondered about on the other repo about XBB.1.18.1 /Fe.1 placement. Now proposed directly by the brazilian scientists of Rede Genômica Fiocruz . So if any news on the tree please refer to this issue.

[AngieHinrichs]

Thanks @FedeGueli. The problem of split/misplaced FE.1 from the other issue seems to have been fixed. 🤞

[FedeGueli]

Thanks @FedeGueli. The problem of split/misplaced FE.1 from the other issue seems to have been fixed. 🤞

Thank you Angie! Great work as usual.

[FedeGueli]

Still 82 seqs it seems it slowed down a lot.

[DailyCovidCases]

This branch is dead, please close this issue