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Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(43 seqs,2 countries)+S:L5F,N450D(20 seqs, 2 countries) #2479

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aviczhl2 opened this issue Jan 30, 2024 · 3 comments

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@aviczhl2
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aviczhl2 commented Jan 30, 2024

From branch 1 of sars-cov-2-variants/lineage-proposals#814

GK.1.10+C22986T(S:A475V)+C29668T+A22161G(S:Y200C)+C5526T(Orf1a:T1754I)+C21575T(S:L5F),A22910G(S:N450D)

GISAID query for GK.1.10+S:A475V: C12651T, C28567T,C22986T,-T7049C
No. of seqs: 65(Brazil 54 UK 7 Philippines 1 USA 3)
First: EPI_ISL_18572803, Brazil, 2023-9-11
Latest: EPI_ISL_18831479, Brazil, 2023-12-28

GISAID query for S:Y200C sub-branch: A22161G, C12651T, C22986T
No. of seqs: 40(Brazil)
First: EPI_ISL_18558732, 2023-9-20
Latest: EPI_ISL_18831479, 2023-12-28

GISAID query for S:L5F,N450D sub-sub-branch: C21575T,A22910G,C5526T
No. of seqs: 19(Brazil)
First: EPI_ISL_18814311, 2023-12-3
Latest: EPI_ISL_18831479, 2023-12-28

usher

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@Sinickle
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Sinickle commented Feb 1, 2024

The L5F N450D subbranch is now found in Florida - 1 seq, collected Jan 16.

@corneliusroemer
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Child lineages with 200C and 450D are interesting but still a bit slow, let's wait a bit more

@aviczhl2 aviczhl2 changed the title Stepwise GK.1.10+S:A475V(65 seqs)+S:Y200C(40 seqs)+S:L5F,N450D(19 seqs) Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(40 seqs)+S:L5F,N450D(19 seqs) Feb 2, 2024
@aviczhl2 aviczhl2 changed the title Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(40 seqs)+S:L5F,N450D(19 seqs) Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(41 seqs)+S:L5F,N450D(20 seqs) Feb 4, 2024
@aviczhl2 aviczhl2 changed the title Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(41 seqs)+S:L5F,N450D(20 seqs) Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(41 seqs,2 countries)+S:L5F,N450D(20 seqs, 2 countries) Feb 4, 2024
@aviczhl2
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aviczhl2 commented Feb 4, 2024

+1 USA for Y200C,L5F,N450D branch

@aviczhl2 aviczhl2 changed the title Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(41 seqs,2 countries)+S:L5F,N450D(20 seqs, 2 countries) Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(43 seqs,2 countries)+S:L5F,N450D(20 seqs, 2 countries) Feb 8, 2024
@corneliusroemer corneliusroemer added this to the GK.10.1 KN.1 KN.1.1 milestone Feb 12, 2024
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