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New BA.2.12.1 sublineage with ORF1a:T2967A mutation circulating in USA, Peru and Belgium. #784

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Wen1953 opened this issue Jun 23, 2022 · 2 comments
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New BA.2.12.1 sublineage with ORF1a:T2967A mutation circulating in USA, Peru and Belgium. #784

Wen1953 opened this issue Jun 23, 2022 · 2 comments
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@Wen1953
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Wen1953 commented Jun 23, 2022

Description
New possible omicron sub-lineage with ORF1a:T2967A mutation proposed by the Group of SARS-CoV-2 Genomic Surveillance of the Instituto Nacional de Salud (INS) from Peru.

Earliest sequence: 2022-05-03
USA/NY-PRL-2022_0506_02H16/2022

Most recent sequence: 2022-06-13
USA/AZ-ASU82527/2022

Countries circulating:
Peru (46)
USA (7)
Belgium (2)

Genomes
Genomes.csv

Evidence
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_21a07_4c34f0.json?c=pango_lineage_usher&label=nuc%20mutations:T13417C
Captura de pantalla de 2022-06-23 14-51-22
Captura de pantalla de 2022-06-23 15-17-53

Proposed lineage name
BA.2.12.1.X
@Wen1953 Wen1953 changed the title New BA..2.12.1 sublineage with ORF1a:T2967A mutation circulating in USA, Peru and Belgium. New BA.2.12.1 sublineage with ORF1a:T2967A mutation circulating in USA, Peru and Belgium. Jun 23, 2022
@InfrPopGen InfrPopGen self-assigned this Jun 24, 2022
InfrPopGen added a commit that referenced this issue Jun 24, 2022
@InfrPopGen
Merge pull request #792 from InfrPopGen/master
7df45ea 
Added new lineage BG.3 from #784 with 28 new sequence designations, and 1 updated designations from BA.2.12.1
@InfrPopGen InfrPopGen added this to the BG.3 milestone Jun 24, 2022
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Thanks for submitting. We've added lineage BG.3 with 28 newly designated sequences, and 1 updated designation from BA.2.12.1. Defining mutation(s) A9164G (Orf1a:T2967A).

@Wen1953
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Wen1953 commented Jun 24, 2022

Thanks @InfrPopGen

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