Releases · cov-lineages/pango-designation · GitHub

17 Jun 07:13

chrisruis

pango-designation v1.10

Added new lineage AY.98.1.1 from #604 with 558 new sequence designations, and 11 updated designation from AY.98.1
Added new lineage BA.1.15.3 from #573 with 104 new sequence designations and 53 updated from BA.1.15
Added new lineage BA.1.23 from #663 with 8 new sequence designations, and 1 updated designations from BA.1
Added new lineage BA.1.24 from #666 with 6 new sequence designations, and 0 updated designations
Added new lineage BA.2.10.3 from #609 with 21 new sequence designations, and 34 updated designation from BA.2.10
Added new lineage BA.2.12.2 from #686 with 220 new sequence designations, and 216 updated designations from BA.2.12
Added new lineage BA.2.2.1 from #675 with 9 new sequence designations and 12 updated from BA.2.2
Added new lineage BA.2.3.10 with 421 new sequence designations and 204 updated from BA.2.3
Added new lineage BA.2.3.11 with 737 new sequence designations and 258 updated from BA.2.3
Added new lineage BA.2.3.12 with 1544 new sequence designations and 531 updated from BA.2.3
Added new lineage BA.2.3.12 with 656 new sequence designations and 51 updated from BA.2.3
Added new lineage BA.2.3.14 with 556 new sequence designations and 52 updated from BA.2.3
Added new lineage BA.2.3.15 with 622 new sequence designations and 329 updated from BA.2.3
Added new lineage BA.2.3.16 from #524 with 90 new sequence designations and 1 updated from BA.2.3
Added new lineage BA.2.3.17 from #677 with 795 new sequence designations and 420 updated from BA.2.3
Added new lineage BA.2.3.18 from #687 with 131 new sequence designations and 30 updated from BA.2.3
Added new lineage BA.2.3.5 from #627 with 144 new sequence designations, and 55 updated designations from BA.2.3
Added new lineage BA.2.3.6 from #633 with 536 new sequence designations, and 108 updated designations from BA.2.3
Added new lineage BA.2.3.7 from #643 with 20 new sequence designations, and 0 updated designations
Added new lineage BA.2.3.8 with 141 new sequence designations and 7 updated from BA.2.3
Added new lineage BA.2.3.9 with 211 new sequence designations and 121 updated from BA.2.3
Added new lineage BA.2.42 from #610 with 72 new sequence designations, and 3 updated designation from BA.2
Added new lineage BA.2.43 from #612 with 25 new sequence designations, and 0 updated designations
Added new lineage BA.2.44 from #613 with 139 new sequence designations, and 10 updated designations from BA.2
Added new lineage BA.2.45 from #616 with 405 new sequence designations, and 33 updated designations from BA.2
Added new lineage BA.2.46 from #626 with 111 new sequence designations, and 6 updated designations from BA.2
Added new lineage BA.2.47 from #631 with 803 new sequence designations, and 45 updated designations from BA.2
Added new lineage BA.2.48 from #634 with 676 new sequence designations, and 16 updated designations from BA.2
Added new lineage BA.2.49 from #640 with 630 new sequence designations, and 40 updated designations from BA.2
Added new lineage BA.2.50 from #641 with 514 new sequence designations, and 34 updated designations from BA.2
Added new lineage BA.2.51 from #644 with 288 new sequence designations, and 22 updated designations from BA.2
Added new lineage BA.2.52 from #648 with 239 new sequence designations, and 1 updated designations from BA.2
Added new lineage BA.2.53 from #651 with 142 new sequence designations, and 3 updated designations from BA.2
Added new lineage BA.2.54 from #658 with 135 new sequence designations, and 1 updated designations from BA.2
Added new lineage BA.2.55 from #660 with 110 new sequence designations, and 5 updated designations from BA.2
Added new lineage BA.2.56 from #668 with 487 new sequence designations, and 9 updated designations from BA.2
Added new lineage BA.2.56.1 from #745 with 30 new sequence designations
Added new lineage BA.2.57 with 282 new sequence designations and 32 updated from BA.2
Added new lineage BA.2.58 with 108 new sequence designations and 4 updated from BA.2
Added new lineage BA.2.59 from #672 with 198 new sequence designations, and 8 updated designations from BA.2
Added new lineage BA.2.60 with 84 new sequence designations and 4 updated from BA.2
Added new lineage BA.2.61 with 66 new sequence designations
Added new lineage BA.2.62 with 255 new sequence designations and 13 updated from BA.2
Added new lineage BA.2.63 with 126 new sequence designations and 2 updated from BA.2
Added new lineage BA.2.64 with 377 new sequence designations and 36 updated from BA.2
Added new lineage BA.2.65 with 1928 new sequence designations and 95 updated from BA.2
Added new lineage BA.2.66 with 254 new sequence designations and 30 updated from BA.2
Added new lineage BA.2.67 with 225 new sequence designations and 31 updated from BA.2
Added new lineage BA.2.68 with 700 new sequence designations and 11 updated from BA.2
Added new lineage BA.2.69 with 68 new sequence designations and 1 updated from BA.2
Added new lineage BA.2.70 with 188 new sequence designations and 7 updated from BA.2
Added new lineage BA.2.71 from #695 with 72 new sequence designations, and 5 updated designations from BA.2
Added new lineage BA.2.72 from #698 with 323 new sequence designations, and 20 updated designations from BA.2
Added new lineage BA.2.73 from #632 with 185 new sequence designations and 4 updated from BA.2
Added new lineage BA.2.9.3 from #630 with 609 new sequence designations, and 124 updated designations from BA.2.9
Added new lineage BA.2.9.4 from #635 with 230 new sequence designations, and 34 updated designations from BA.2.9
Added new lineage BA.4.1 from #548 with 140 new sequence designations, and 12 updated designations from BA.4
Added new lineage BA.4.1.1 from #667 with 34 new sequence designations, and 15 updated designations from BA.4.1
Added new lineage BA.4.1.2 with 24 new sequence designations and 67 updated from BA.4.1
Added new lineage BA.5.2 from #551 with 3 new sequence designations, and 62 updated designations from BA.5
Added new lineage BA.5.2.1 from #657 with 201 new sequence designations, and 94 updated designations from BA.5.4, and 31 from BA.5.2
Added new lineage BA.5.3 from #550 with 8 new sequence designations, and 122 updated designations from BA.5
Added new lineage BA.5.3.1 from #625 with 63 new sequence designations, and 19 updated designations from BA.5.3
Added new lineage BA.5.3.2 from #697 with 117 new sequence designations, and 21 updated designations from BA.5.3
Added new lineage BA.5.4 from #618 with 64 new sequence designations, and 31 updated designations from BA.5.2
Added new lineage BA.5.5 from #656 with 137 new sequence designations, and 8 updated designations from BA.5
Added new lineage BC.2 from #570 with 77 new sequence designations and 19 updated from BA.1.1.1
Added new lineage BD.1 with 3471 new sequence designations and 933 updated from BA.1.17.2
Added new lineage BD.1 with 3471 new sequence designations and 933 updated from BA.1.17.2
Added new lineage BE.1 from #625 with 0 new sequence designations, and 55 updated designations from BA.5.3.1
Added new lineage BF.1 from #618 with 1 new sequence designations, and 94 updated designations from BA.5.2.1
Added new lineage BG.1 from #679 with 28 new sequence designations and 9 updated from BA.2.12.1
Added new lineage XAD from #607 with 39 new sequence designations and 3 updated from BA.2
Added new lineage XAE from #637 with 59 new sequence designations and 1 updated from BA.2
Added new lineage XAF from #676 with 71 new sequence designations
Added new lineage XAG from #709 with 47 new sequence designations
Added new lineage XAH from #755 with 56 new sequence designations and 2 updated from BA.2
Added new recombinant lineage XAA from #664 with 49 new sequence designations, and 0 updated designations
Added new recombinant lineage XAB from #665 with 81 new sequence designations, and 0 updated designations
Added new recombinant lineage XAC from #590 with 126 new sequence designations, and 3 updated designations
Added new recombinant lineage XY from #606 with 36 new sequence designations, and 0 updated designations
Added new recombinant lineage XZ from #636 with 61 new sequence designations, and 0 updated designations
Added 1000 new BA.2.3.1 sequence designations
Added 10000 new BA.1 sequence designations
Added 10000 new BA.1.1 sequence designations
Added 10000 new BA.1.1.1 sequence designations
Added 10000 new BA.1.1.2 sequence designations
Added 10000 new BA.2 sequence designations
Added 10000 new BA.2.12.1 sequence designations
Added 10000 new BA.2.3 sequence designations
Added 101 new BA.2.3.16 sequence designations, 76 new and 25 updated from BA.2.3
Added 150 new BA.5 sequence designations
Added 16 new BA.2.12.1 sequence designations close to BG.1
Added 200 new BA.2.10.2 sequence designations
Added 50 new BA.2.35 sequence designations
Added 500 new BA.2.24 sequence designations
Added 500 new BA.2.29 sequence designations
Added 500 new BA.2.3.2 sequence designations
Added 500 new BA.4 sequence designations
Added 500 new BA.4.1 sequence designations
Readded lineage BC.1 with 5781 new sequence designations
Removed 12 sequence designations
Removed 282 sequence designations with duplicate sequence names in multiple lineages
Updated 14 designations from B.1 sublineages to B.1 and removed 81 designations from B.1 sublineages
Updated 8 sequence designations that cluster in a different lineage with the defining mutation

Assets 2

13 May 16:14

chrisruis

pango-designation v1.9

Added new lineage BA.2.35 from #554 with 31 new sequence designations and 5 updated designations
Added new lineage BA.2.36 from #565 with 976 new sequence designations, and 109 updated designations
Added new lineage BA.2.37 from #572 with 2835 new sequence designations, and 1126 updated designations from BA.2, and 10 updated from BA.2.12
Added new lineage BA.2.38 from #541 with 106 new sequence designations and 40 updated from BA.2
Added new lineage BA.2.39 from #575 with 403 new sequence designations, and 34 updated designations from BA.2
Added new lineage BA.2.40 from #542 with 100 new sequence designations, and 2 updated designations from BA.2
Added new lineage BA.2.40.1 from #542 with 0 new sequence designations, and 78 updated designations from BA.2.40
Added new lineage BA.2.41 from #586 with 561 new sequence designations, and 51 updated designation from BA.2
Added new lineage BA.2.10.2 from #569 with 50 new sequence designations, and 1 updated designation from BA.2.10
Added new lineage BA.2.23.1 from #532 with 162 new sequence designations, and 145 updated designations from BA.2.23
Added new lineage XV from #463 with 42 new sequence designations
Added new recombinant lineage XW from #591 with 48 new sequence designations
Withdrew lineage BA.2.3.3 based on #578
Added 10000 new BA.1 sequence designations
Added 10000 new BA.1.1 sequence designations
Added 9561 new BA.1.17 sequence designations
Added 20000 new BA.1.17.2 sequence designations
Added 10000 new BA.2 sequence designations
Added 3000 new BA.2.1 sequence designations
Added 400 new BA.2.2 sequence designations
Added 9582 new BA.2.3 sequence designations
Added 200 new BA.2.3.1 sequence designations
Added 200 new BA.2.6 sequence designations
Added 38314 new BA.2.9 sequence designations
Added 100 new BA.2.11 sequence designations
Added 178 new BA.2.12 sequence designations close to BA.2.12.1 and an additional 1158 BA.2.12 sequence designations
Added 4547 new BA.2.12.1 sequence designations based on #596 and 5000 additional BA.2.12.1 sequence designations
Added 200 new BA.2.13 sequence designations
Added 199 new BA.3 sequence designations
Added 177 new BA.5 sequence designations

Assets 2

22 Apr 15:19

chrisruis

pango-designation v1.8

Added new lineage BA.3.1 from #540 with 192 new sequence designations
Added 43735 new BA.1 sequence designations
Added 44342 new BA.1.1 sequence designations
Added 42752 new BA.2 sequence designations
Added 820 new BA.1 sequence designations close to BA.1.22
Added 901 new BA.2 sequence designations close to BA.2.2
Added 220 new BA.2 sequence designations close to BA.2.8
Added 1536 new BA.2 sequence designations close to BA.2.12
Added 887 new BA.2 sequence designations close to BA.2.13
Added 5 new BA.2 sequence designations close to BA.2.18
Added 895 new BA.2 sequence designations close to BA.2.22
Added 452 new BA.2 sequence designations close to BA.2.26
Added 188 new BA.2 sequence designations close to BA.2.30
Added 90 new BA.2 sequence designations close to BA.2.32
Added 899 new BA.2 sequence designations close to BA.2.33

Assets 2

20 Apr 15:54

chrisruis

pango-designation v1.7

Added new lineage BA.1.22 from #529 with 32 new sequence designations
Added new lineage BA.1.1.18 with 34622 new sequence designations and 9 updated from BA.1.1
Added new lineage BA.2.3.3 from #524 with 321 new sequence designations
Added new lineage BA.2.3.4 with 204 new sequence designations
Added new lineage BA.2.9.2 with 413 new sequence designations and 16 updated from BA.2.9
Added new lineage BA.2.17 from #520 with 49 new sequence designations and 7 updated from BA.2
Added new lineage BA.2.18 from #528 with 960 new sequence designations
Added new lineage BA.2.19 from #535 with 382 new sequence designations
Added new lineage BA.2.20 from #544 with 207 new sequence designations
Added new lineage BA.2.21 from #547 with 166 new sequence designations and 29 updated from BA.2
Added new lineage BA.2.22 from #562 with 992 new sequence designations
Added new lineage BA.2.23 from #546 with 6434 new sequence designations
Added new lineage BA.2.24 with 20 new sequence designations
Added new lineage BA.2.25 with 424 new sequence designations
Added new lineage BA.2.25.1 with 32 sequence designations updated from BA.2.25
Added new lineage BA.2.26 with 245 new sequence designations
Added new lineage BA.2.27 with 40 new sequence designations
Added new lineage BA.2.28 with 31 new sequence designations
Added new lineage BA.2.29 with 65 new sequence designations
Added new lineage BA.2.30 with 43 new sequence designations
Added new lineage BA.2.31 with 457 new sequence designations
Added new lineage BA.2.32 with 348 new sequence designations
Added new lineage BA.2.33 with 318 new sequence designations
Added new lineage BA.2.34 with 181 new sequence designations
Added 4580 new BA.1 sequence designations in region of BA.1.16
Added 4503 new BA.2 sequence designations in region of BA.2.12
Added 9 new BA.2 sequence designations close to BA.2.21
Added 39 new BA.2 sequence designations
Added new lineage XU from #522 with 7 new sequence designations
Added new lineage AY.39.1.4 from #438 with 2945 new sequence designations, and 1 updated designations
Reassigned lineage AY.39.4 from #406 to AY.134

Assets 2

15 Apr 07:47

aineniamh

pango designations v1.6

Update to alias.json file including lineage XT now.

Assets 2

14 Apr 16:35

chrisruis

pango-designation v1.5

Added new lineage BA.1.1.17 from #452 with 403 new sequence designations
Added new lineage BA.1.16.2 with 58 new sequence designations and 20 updated from BA.1.16
Added new lineage BA.2.14 from #512 with 502 new sequence designations
Added new lineage BA.2.15 from #533 with 58 new sequence designations
Added new lineage BA.2.16 from #534 with 379 new sequence designations
Added new lineage XT from #478 with 12 new sequence designations
Added new lineage AY.4.2.5 from #543 with 754 new sequence designations
Added new lineage AY.33.2 from #403 with 598 new sequence designations and 3 updated designations
Added new lineage AY.39.4 from #406 with 801 new sequence designations
Added 186 new AY.7.1 sequence designations based on #465

Assets 2

08 Apr 16:32

chrisruis

pango-designation v1.4

Added new lineage BA.2.9.1 from #530 with 98 new sequence designations and 1 updated from BA.2.9
Added new lineage BA.2.13 from #531 with 53 new sequence designations
Added new lineage BA.1.20 from #375 with 17424 new sequence designations
Added new lineage BA.1.21 from #505 with 5064 new sequence designations and 3 updated from BA.1
Added new lineage BA.1.21.1 from #409 with 539 sequence designations updated from BA.1.21
Added new lineage BA.1.14.1 from #506 with 1360 new sequence designations and 558 updated from BA.1.14
Added new lineage BA.1.14.2 with 175 new sequence designations and 225 updated from BA.1.14
Added new lineage BA.1.15.2 from #508 with 1082 new sequence designations and 369 updated from BA.1.15
Added new lineage AY.122.6 from #394 with 634 new sequence designations
Added new lineage AY.127.3 from #525 with 28 new sequence designations

Assets 2

06 Apr 12:02

chrisruis

pango-designation v1.3

Added new lineage BA.4 from #517 with 26 new sequence designations
Added new lineage BA.5 from #517 with 16 new sequence designations
Added new lineage BA.2.11 from #491 with 27 new sequence designations
Added new lineage BA.2.12 from #499 with 1495 new sequence designations
Added new lineage BA.2.12.1 from #499 with 265 new sequence designations
Added new lineage BA.2.3.2 with 118 new sequence designations
Added new lineage BA.2.10.1 with 28 new sequence designations and 1641 updated from BA.2.10
Added new lineage AY.112.3 from #388 with 196 new sequence designations
Added B.1.1.228 back into lineage_notes.txt and removed B.1.88.1 as the parent had previously been withdrawn

Assets 2

01 Apr 16:27

chrisruis

pango-designation v1.2.141

Added new lineage XP from #481 with 54 new sequence designations
Added new lineage XQ from #468 with 56 new sequence designations
Added new lineage XR from #469 with 65 new sequence designations
Added new lineage XS from #471 with 36 new sequence designations

Assets 2

01 Apr 13:23

InfrPopGen

pango-designation v1.2.140

Added new lineage BA.1.17.2 from #462 with 4219 new sequence designations
Added new lineage BA.2.9 from #432 with 4816 new sequence designations
Added new lineage XN from #480 with 76 new sequence designations
Added new lineage BA.2.3.1 from #495 with 59 new sequence designations
Added new lineage BA.2.10 from #496 with 13594 new sequence designations

Assets 2