annotating the output formats for record

cov-lineages · May 6, 2020 · c10c3fd · c10c3fd
1 parent 34211fa
commit c10c3fd
Showing 1 changed file with 16 additions and 0 deletions.
diff --git a/pangolin/scripts/all_snps.py b/pangolin/scripts/all_snps.py
@@ -6,6 +6,22 @@
 import os
 cwd = os.getcwd()
 
+"""
+Current output:
+--mask-out
+lineage,snp,taxon
+B,2897GT,WH0X/Taxon/Name
+
+--defining-snps-out
+lineage,defining_snps
+B,2897GT;30000TA
+
+--representative-seqs-out
+lineage,name
+B,WH0X/Taxon/Name
+"""
+
+
 def parse_args():
     parser = argparse.ArgumentParser(description='Find all snps.')