Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Provide data packages compatibility list #474

Merged
merged 1 commit into from Jul 13, 2022

Conversation

wm75
Copy link
Contributor

@wm75 wm75 commented Jul 13, 2022

I've compiled a list of most pangolin-associated data package (pangolin-data, pangolin-assignment, constellations) releases usable with pangolin > v4, and their minimal requirements in terms of pangolin and scorpio.
Including it here (or in any other pangolin subfolder) would have an immediate benefit in the Galaxy world where for reproducibility we are aiming at offering users "historic" versions of the data packages through preinstalled datadirs.
We could make this list the source of truth in terms of which such versions exist and which of them to offer with which Galaxy pangolin wrapper. @pvanheus is currently working on this issue and it would simplify things for him a lot.

Beyond that, pangolin itself could use the list at some point to warn users about incompatible combinations of pangolin, scorpio and the data packages.

@aineniamh
Copy link
Member

Yeah, very happy to have this included! Thanks for this @wm75 😄

@aineniamh aineniamh merged commit 1ff2899 into cov-lineages:master Jul 13, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants