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COVID-19 Data Processing Pipelines and datasets

Join the chat at https://gitter.im/covid19-data/community

This repository hosts workflows to process several data sources and cleaned datasets for COVID-19 cases across the world.

Datasets

Historical (daily) case data

Country metadata

Historical case data for visualizations

Note

Cases on cruise ships were classified as "international". These data were not shown in the visualizations independently but were included in cases within the data for the "World".

Deprecated

WHO dataset is deprecated. See Our World in Data's announcement: Why we stopped relying on data from the World Health Organization

Usage

Install pandas and snakemake using conda.

conda install -c bioconda -c conda-forge snakemake pandas numpy

or pip:

pip install pandas snakemake numpy

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COVID-19 workflows and datasets.

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