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Describe the bug
Searching for MS/MS cross-linking,
The file "/storage/maxquant/both_substitution/combined/clsearch/pep/peptides.ind" was not found."" with the error
To Reproduce
Steps to reproduce the behavior: 1. within the maxqaunt GUI application on a Window operating system, define and save a new crosslinking. (See figure 1) 2. Copy the entire Maxquant 2.4.12.0 directory and move it to a Linux virtual server. 3. modify the mqpar.xml file created on Windows to suit the Linux system. 4. Create a mono environment with the Mono JIT compiler version 6.12.0.90 using conda (
conda create -n mono, conda install mono) 5. submit a job to slurm
#!/bin/bash
#SBATCH -J Maxquant
#SBATCH -t UNLIMITED
#SBATCH -p Node1
#SBATCH -n 42
mono /home/program/MaxQuant_v_2.4.12.0/MaxQuant_v_2.4.12.0/bin/MaxQuantCmd.exe mqpar.xml 6. although all previous steps are successful,
MS/MS crosslink search step
error "System.IO.FileNotFoundException: Could not find file "/storage/maxquant/both_substitution/combined/clsearch/pep/peptides.ind"".
Expected behavior
Screenshots
If applicable, add screenshots to help explain your problem.
Desktop (please complete the following information):
OS: CentOS Linux release 7.9.2009
Version MaxQuantCmd 2.4.12.0
Additional context
If the composition of the hydrolyzed composition and the linked composition are exactly the same, the program will run without errors.
The text was updated successfully, but these errors were encountered:
Dear COCOJJLEE,
What I can see from the screenshot is that at Specificity 2 the Lysine should also be in Uppercase. If that still produces the error please share your data here. The data will be handled confidentially.
Describe the bug
Searching for MS/MS cross-linking,
The file "/storage/maxquant/both_substitution/combined/clsearch/pep/peptides.ind" was not found."" with the error
To Reproduce
Steps to reproduce the behavior:
1. within the maxqaunt GUI application on a Window operating system, define and save a new crosslinking. (See figure 1)
2. Copy the entire Maxquant 2.4.12.0 directory and move it to a Linux virtual server.
3. modify the mqpar.xml file created on Windows to suit the Linux system.
4. Create a mono environment with the Mono JIT compiler version 6.12.0.90 using conda (
conda create -n mono, conda install mono)
5. submit a job to slurm
#!/bin/bash
#SBATCH -J Maxquant
#SBATCH -t UNLIMITED
#SBATCH -p Node1
#SBATCH -n 42
mono /home/program/MaxQuant_v_2.4.12.0/MaxQuant_v_2.4.12.0/bin/MaxQuantCmd.exe mqpar.xml
6. although all previous steps are successful,
MS/MS crosslink search step
error "System.IO.FileNotFoundException: Could not find file "/storage/maxquant/both_substitution/combined/clsearch/pep/peptides.ind"".
Expected behavior
Screenshots
If applicable, add screenshots to help explain your problem.
Desktop (please complete the following information):
Additional context
If the composition of the hydrolyzed composition and the linked composition are exactly the same, the program will run without errors.
The text was updated successfully, but these errors were encountered: