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[ENH]: make segmentation inputs biasfwhm and samp (sampling distance) possible to change #545

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marcobarilari opened this issue Apr 27, 2022 · 3 comments
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@marcobarilari
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marcobarilari commented Apr 27, 2022

Is there an existing issue for this?

  • I have searched the existing issues

New feature

add `opt.segment.biasfwhm = 60;` and `opt.segment.samplingDistance = 3;` as default and in `setBatchSegmentation` line 51 and 99


matlabbatch{end}.spm.spatial.preproc.channel.biasfwhm = opt.segment.biasfwhm;

[...]

matlabbatch{end}.spm.spatial.preproc.warp.samp = opt.segment.samplingDistance;

Unclear documentation

this goes into dev branch

see [this](https://surfer.nmr.mgh.harvard.edu/fswiki/HighFieldRecon) to see why it is useful
@Remi-Gau
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More options!!! Yay!!!

@marcobarilari
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marcobarilari commented Apr 28, 2022

If u agree I'll take care of this. Will try to identify all the files in which I need to add a new option 🤠.

@Remi-Gau
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go for it.

pointers:

Remi-Gau added a commit that referenced this issue Apr 28, 2022
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