First Pass - Repository APIs #255
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JPercival
commented
Feb 23, 2023
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JPercival
commented
- This PR introduces a new set of FHIR "Repository" APIs
- WIP towards refactoring existing components to support those new APIs
- Initial documentation website for this project
- Numerous breaking changes, version updated to 3.0.0-SNAPSHOT to prep for next major release.
* add test data * BundleFhirRepository wip * add test utility * update test data * load test data test * R4MeasureProcessor constructor * update Repository api changes, develop R4TestRepository * add tests for R4TestRepository * relocate fhirRepository * relocate BundleFhirRepository * import fix * use utility for new Bundle creation * update fhir repository searchByurl
* add test data * BundleFhirRepository wip * add test utility * update test data * load test data test * R4MeasureProcessor constructor * update Repository api changes, develop R4TestRepository * add tests for R4TestRepository * relocate fhirRepository * relocate BundleFhirRepository * import fix * use utility for new Bundle creation * update fhir repository searchByurl * add federated repository * Repository api constructs * remove println
* Added the queryBatchThreshold, maxCodesPerQuery, pageSize and shouldE… (#208) Added the queryBatchThreshold, maxCodesPerQuery, pageSize and shouldExpandValueSets configuration to CqlEngineOptions * Rev to engine snapshot 2.4.0 (#209) * Changed maxCodesPerQuery type to Integer in RetrieveProviderConfig (#210) * add test data * BundleFhirRepository wip * add test utility * update test data * load test data test * R4MeasureProcessor constructor * release v2.4.0 (#211) * snapshot v2.5.0 (#212) * Create add-to-platform-project.yml * update Repository api changes, develop R4TestRepository * add tests for R4TestRepository * relocate fhirRepository * relocate BundleFhirRepository * import fix * use utility for new Bundle creation * update fhir repository searchByurl * Update BundleRetrieveProvider.java to use streams (#220) Update BundleRetrieveProvider.java to use Java streams to filter resources. This results in cleaner, more concise code as well as better performance as a new ArrayList is not being created for each filter stage. This change should not result in any visible change in behavior. * Concise assertions in BundleRetrieveProvider.java (#221) Use more concise assertions in BundleRetrieveProvider.java. For example, rely on the fact that Matchers.contains() ensures that the iterable size matches the number of items passed to contains(). * Add Questionnaire and QuestionnaireResponse modules (#229) * Add Questionnaire modules * Fix prepopulate test * Fix prepopulate apply test * Add dstu3 and r4 tests for Questionnaire * Inc version * First pass of definition based extraction * release v2.5.0 (#234) * release v2.5.0 * update latest module * update more latest module * update latest module in evaluator * update version in evaluator dependencies * remove redundant dependency * tests are failing * update test fixture to remove id from Parameters * Snapshot v2.6.0 (#236) * stop auto close on staging repo on deploy * snapshot-v2.6.0 * use version var * Integrating care-gaps common code. (#237) Co-authored-by: Chalma Maadaadi <chalma@alphora.com> * Add GoogleStyle as default Java format * Clean up build warnings * Eagerly cache resource in Bundle provider (#241) * Add definition based extraction and add extract step during apply (#238) Add dstu3 and r5 tests for populate, extract and apply operations * Add github actions for checking PRs and publishing Snapshots (#230) * Add github actions for checking PRs and publishing Snapshots * Remove travis * Fix relative IG path * Update publish-snapshot.yml * Use set for evaluated resources (#242) * Use set for evaluated resources * Fix some warnings in BundleRetrieveProvider * Disable test failing on CI server * Fix CI publish * add federated repository * release 2.6.0 (#245) * snapshot 2.7.0 (#246) * Repository api constructs * remove println * Add error/warning OperationOutcome to $apply/$prepopulate. Implement generateQuestionnaire. (#249) * Add error/warning OperationOutcome to $apply/$prepopulate. Implement generateQuestionnaire. * Use CRMI messages extension for operation outcomes --------- Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com> * Add Google style editor config * clear dependency * temp change * rectify cql compiler version name * update mvn repository * load library attachment from cql url * rename repository * add Repositories static method * version rectify * Fixes for cycles * Update CQL versions --------- Co-authored-by: Adam Stevenson <stevenson_adam@yahoo.com> Co-authored-by: JP <jonathan.i.percival@gmail.com> Co-authored-by: Aaron Nash <101207345+aaron-nash@users.noreply.github.com> Co-authored-by: Brenin Rhodes <brenin@alphora.com> Co-authored-by: chalmarm <44471040+chalmarm@users.noreply.github.com> Co-authored-by: Chalma Maadaadi <chalma@alphora.com>
JPercival
added
enhancement
mdnazmulkarim
approved these changes
Feb 23, 2023
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