#IN_WORK

cellulolytic_consortia

Supplement files for the dataset of four cellulolytic culturome consortia.

The repository consists of different notebooks with example code used for the data processing. Most bash scripts have been used inside Jupyter notebook environment(for the reproducing issues). Different conda environments were used - dependencies are exported into yaml files.

The entire pipeline is described in the article’s material and methods.

#article

Files descriptions:

• com_16.Rmd - 16S data postprosessing after dada2 pipeline
• com_bash.ipynb - some bash script for processing ONT data
• com_postprocessing.Rmd - processing annotation of ONT data in R