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c7rishi authored and cran-robot committed Dec 18, 2019
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10 changes: 5 additions & 5 deletions DESCRIPTION
@@ -1,15 +1,15 @@
Package: BAMBI
Type: Package
Title: Bivariate Angular Mixture Models
Version: 2.1.0
Date: 2019-03-16
Version: 2.2.0
Date: 2019-12-17
Author: Saptarshi Chakraborty,
Samuel W.K. Wong
Maintainer: Saptarshi Chakraborty <chakra.saptarshi@gmail.com>
Description: Fit (using Bayesian methods) and simulate mixtures of univariate and bivariate angular distributions. Chakraborty and Wong (2017) <arXiv:1708.07804> .
License: GPL-3
LazyData: TRUE
RoxygenNote: 6.0.1
RoxygenNote: 7.0.1
LinkingTo: Rcpp, RcppArmadillo
Imports: stats, graphics, lattice, grDevices, Rcpp, tcltk, rootSolve,
qrng, mvtnorm, gtools, parallel, label.switching, methods,
Expand All @@ -20,6 +20,6 @@ Depends: R (>= 3.2.0)
URL: https://arxiv.org/abs/1708.07804
BugReports: https://github.com/c7rishi/BAMBI/issues
NeedsCompilation: yes
Packaged: 2019-03-16 19:57:03 UTC; samuel
Packaged: 2019-12-18 02:46:59 UTC; sap_c
Repository: CRAN
Date/Publication: 2019-03-16 20:43:42 UTC
Date/Publication: 2019-12-18 16:40:02 UTC
78 changes: 39 additions & 39 deletions MD5
@@ -1,27 +1,27 @@
0dc69de339a6b6ad84ec57732470a2d2 *DESCRIPTION
72f0665682d91407f00706e1f1bad4bf *NAMESPACE
561b9e7a49b89b28c5481a54dcb32dad *R/BAMBI.R
0c23e5b0a32114db8b67a2d43b951a6f *R/RcppExports.R
ac2dd6e249bb203ba728cc3376c9c796 *R/all_diagnostics.R
5f5d3283ae0f004e92578dc45ea2edca *R/all_model_plots.R
1146cc704f707e926f025a0ccdffb67a *R/all_model_select.R
39b612394ff2239dc9a9661e70738fd6 *R/all_postprodn_fns.R
dc66f8e9608a4c00fe76080f9e212d2e *R/all_vm_fns.R
a0cc91f5293a78fee91bdb64c7016339 *R/all_vmcos_fns.R
c4a0a9cc2f1e85944e39df50581e1025 *R/all_vmsin_fns.R
bd61bd53b68b15e60f077fc2712800b8 *R/all_wnorm2_fns.R
945a0230b8bcc5661c2ef93a452871d7 *R/all_wnorm_fns.R
54a6037e89c31ee113b6021275fa76ac *R/basic_fns.R
a5dc58c425c3dc02e2e60ec77a7c9665 *R/basic_surfaceplot.R
bbfa103c8cf23564250d9592ce63d0b0 *R/bounded_hmc_biv.R
3a770ea0527ae4d71dc37e71b658db43 *R/bounded_rmwh_biv.R
464572e63276682ec3da1d8f3321c45a *R/circ_cor.R
111bb1c3e0f09827b97aaa3187878b30 *R/data.R
5de43c683ce97096ae3c42470c3b38d8 *R/fit_mixmodel.R
a35f7fc1721badba0df00e2631ed21e0 *R/process_startpar.R
99536cba89a6c49e95f67e0f38f8255c *R/vmstart.R
4c6170f06176004edf8a16676e01314c *R/wnormstart.R
2c3c49bfabe87dbc597c78eeba7a4184 *R/wrap_angles.R
86a032b9df7c641a2240a9eb9ea8dff9 *DESCRIPTION
395eaa4d41172144ebd78dcb9d50abe3 *NAMESPACE
1b8a5ee4961240af2f0df04088f0c293 *R/BAMBI.R
8fe069750a9c301f0ebdf67ab9caae36 *R/RcppExports.R
855215fea08e44ca8c7ee90e83c456f9 *R/all_diagnostics.R
7af22d5f31fcd7fa765f3502cf97e352 *R/all_model_plots.R
a348a16939aa6dd4308ab5f9f73c2fa7 *R/all_model_select.R
a6be61e9ae680598ba46146c3ae6e459 *R/all_postprodn_fns.R
3733ad9b08c24e656cbbf1f096518b1f *R/all_vm_fns.R
3d84347c733316b7fc578536673ccaa1 *R/all_vmcos_fns.R
903b48825836c14ed92a8790ee57296b *R/all_vmsin_fns.R
60e088f5a293bb51470ba7687ffe7501 *R/all_wnorm2_fns.R
f10094c081168b208b4baeac148b0bfc *R/all_wnorm_fns.R
0e939d318614addd38cfcaa9abb8976d *R/basic_fns.R
db533dd1a01681a9ea16b18419880cef *R/basic_surfaceplot.R
f70d09489f998bf5de6991fce7690c2e *R/bounded_hmc_biv.R
171d67550ebffbc2e70e64a26e72b2b4 *R/bounded_rmwh_biv.R
82d13adbabd25298425f079d09337eb7 *R/circ_cor.R
9cc9b8750cfae8f23be8bbaca5bb69c8 *R/data.R
97edae843b92c856ab09bd7eac23133d *R/fit_mixmodel.R
b99fc85e69e100decef0e104f20e83f7 *R/process_startpar.R
62dda7e4c3a763f1b5fa95cbc428c187 *R/vmstart.R
b0793a4351800b36841bf9079757d572 *R/wnormstart.R
17eaf365f57e16923938bb95def2ff7d *R/wrap_angles.R
81772a76ae5a785d43670d78b0433f3d *data/tim8.rda
bca492b6087907d406afa5b402fdfdef *data/wind.rda
68fc5b0afc126f003c7e9560d7e61a6c *man/DIC.Rd
Expand All @@ -30,14 +30,14 @@ bca492b6087907d406afa5b402fdfdef *data/wind.rda
45c7ce846768155ef9df412707d66bca *man/bestmodel.Rd
d7dfbf51f0d3d5331d2bc1647c9f3512 *man/bridge_sampler.angmcmc.Rd
b33d86ce0e339c3451492363dc8b8ee2 *man/circ_cor.Rd
84b900d2fbdefbe894128335faf69dd7 *man/circ_varcor_model.Rd
7148936ba62ae72d9aed5e9d4c582f9b *man/contour.angmcmc.Rd
fec2649d0ed44d1430dabbd2ab265566 *man/contour_model.Rd
b3a9346e9e705d294c8c4484f97a6670 *man/d_fitted.Rd
f75448fe90abc574aa398f74d25aa8c2 *man/densityplot.angmcmc.Rd
fdd97d263eaf453de8adb7ffb74fec6c *man/circ_varcor_model.Rd
056ff3d389a8f614a1e7e54398b34cd8 *man/contour.angmcmc.Rd
6fc63ca6d423189cec401c338e379e13 *man/contour_model.Rd
73b6fd04776c1a385a318051ab888c96 *man/d_fitted.Rd
a6a1fe04f7466a142bfdc2a707c51b5c *man/densityplot.angmcmc.Rd
f79483b0d6a4d3b3b9a39070e18f78d8 *man/extractsamples.Rd
7c1bb78973773e8660552977c000a91c *man/fit_angmix.Rd
765d76837f85880fc207d3138db06f1e *man/fit_incremental_angmix.Rd
db041d79cc2d8814b29339718ee66b92 *man/fit_angmix.Rd
b47c772a99991748e69c17114a69da52 *man/fit_incremental_angmix.Rd
4062be472aeaf6a6019c1b649ba2d821 *man/fit_vmcosmix.Rd
d4c9bafe79028c4014722744e96cd8b0 *man/fit_vmmix.Rd
b0d755246c54d375ebe3817f50270c2c *man/fit_vmsinmix.Rd
Expand All @@ -48,24 +48,24 @@ b99a129e00b8552af1bb99fc97464218 *man/is.angmcmc.Rd
c679a3c4b0aff62db1e91772e781513b *man/latent_allocation.Rd
12cd7da780932745949396022f751948 *man/logLik.angmcmc.Rd
85b557ea1d8bae8fea821497d49a6434 *man/loo.angmcmc.Rd
a9d00fcc4f7de632dda0356e45d2d20f *man/lpdtrace.Rd
daa59b6b8ddddda3ca0a1331ad112441 *man/lpdtrace.Rd
9ffbf2a8bf9a3fdcbf1e544322551240 *man/paramtrace.Rd
b0cfbf8001d6d69aae8bee72dd47916e *man/plot.angmcmc.Rd
53e24f59059ec92a4a2949b6ccf76cbc *man/plot.angmcmc.Rd
05b7787259d1cc1ae1120a81fa0d411b *man/pointest.Rd
281a7a7dd4e7e13383567c23eacec79b *man/quantile.angmcmc.Rd
edafd802fb8166893defc0b7a598ea85 *man/quantile.angmcmc.Rd
f5be736fab677fd7dd25629b2d875aeb *man/rvm.Rd
5c2bc32c70a1188e776142266936fef3 *man/rvmcos.Rd
53660b14e0c1aba2f79d6b3a84a7d05b *man/rvmcos.Rd
41f0409c23120d3f366d42e7471e68e7 *man/rvmcosmix.Rd
f2991b3428f203fc5e5dce3c934eb6d4 *man/rvmmix.Rd
b93677334114a7d36e61691e6f1ac9d5 *man/rvmsin.Rd
5a457754848cadb03c454a901cfeea63 *man/rvmsin.Rd
dac0abb08c98ac6d481e96218b3c5535 *man/rvmsinmix.Rd
ef3d19bade884df822da7c9d1113e63c *man/rwnorm.Rd
2d3f622280675cb6b3f571b38e959295 *man/rwnorm2.Rd
76cc939242593e30ff800148e0341e34 *man/rwnorm2.Rd
913422e211494722d20e5592606c90ac *man/rwnorm2mix.Rd
dffbe7f7b75799090a72ba4ea7b93b40 *man/rwnormmix.Rd
bf7c3dfe64e71c9001fb391c2015be0c *man/select_chains.Rd
2b3acaf06c124b3424fe9efbecfb907b *man/select_chains.Rd
2da21405aeb3206c64505153b244b45f *man/summary.angmcmc.Rd
ac67fa49ee404e62d63b3fc245526078 *man/surface_model.Rd
45cdcdd54969aec228798dd96a67fc72 *man/surface_model.Rd
d5af4ed090812fc0bebd5f3a2e498e74 *man/tim8.Rd
99e778378195230a3a55763ba2d9de9b *man/waic.angmcmc.Rd
48553046fab8a02d71ad95f8e4aa9289 *man/wind.Rd
Expand Down
166 changes: 83 additions & 83 deletions NAMESPACE
@@ -1,84 +1,84 @@
# Generated by roxygen2: do not edit by hand

S3method(as.mcmc.list,angmcmc)
S3method(bridge_sampler,angmcmc)
S3method(contour,angmcmc)
S3method(densityplot,angmcmc)
S3method(logLik,angmcmc)
S3method(loo,angmcmc)
S3method(plot,angmcmc)
S3method(print,angmcmc)
S3method(print,stepfit)
S3method(print,summary_angmcmc)
S3method(quantile,angmcmc)
S3method(summary,angmcmc)
S3method(waic,angmcmc)
export(DIC)
export(add_burnin_thin)
export(angmcmc)
export(bestcriterion)
export(bestmodel)
export(circ_cor)
export(circ_varcor_model)
export(contour_model)
export(d_fitted)
export(dvm)
export(dvmcos)
export(dvmcosmix)
export(dvmmix)
export(dvmsin)
export(dvmsinmix)
export(dwnorm)
export(dwnorm2)
export(dwnorm2mix)
export(dwnormmix)
export(extractsamples)
export(fit_angmix)
export(fit_incremental_angmix)
export(fit_vmcosmix)
export(fit_vmmix)
export(fit_vmsinmix)
export(fit_wnorm2mix)
export(fit_wnormmix)
export(fix_label)
export(is.angmcmc)
export(latent_allocation)
export(lpdtrace)
export(minuspi_to_pi)
export(paramtrace)
export(pointest)
export(r_fitted)
export(rvm)
export(rvmcos)
export(rvmcosmix)
export(rvmmix)
export(rvmsin)
export(rvmsinmix)
export(rwnorm)
export(rwnorm2)
export(rwnorm2mix)
export(rwnormmix)
export(select_chains)
export(surface_model)
export(zero_to_2pi)
import(graphics)
import(stats)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp)
importFrom(bridgesampling,bridge_sampler)
importFrom(coda,as.mcmc.list)
importFrom(future.apply,future_lapply)
importFrom(grDevices,colorRampPalette)
importFrom(gtools,rdirichlet)
importFrom(lattice,densityplot)
importFrom(lattice,wireframe)
importFrom(loo,loo)
importFrom(loo,waic)
importFrom(methods,is)
importFrom(mvtnorm,rmvnorm)
importFrom(parallel,detectCores)
importFrom(qrng,sobol)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
useDynLib(BAMBI, .registration = TRUE)
S3method(as.mcmc.list,angmcmc)
S3method(bridge_sampler,angmcmc)
S3method(contour,angmcmc)
S3method(densityplot,angmcmc)
S3method(logLik,angmcmc)
S3method(loo,angmcmc)
S3method(plot,angmcmc)
S3method(print,angmcmc)
S3method(print,stepfit)
S3method(print,summary_angmcmc)
S3method(quantile,angmcmc)
S3method(summary,angmcmc)
S3method(waic,angmcmc)
export(DIC)
export(add_burnin_thin)
export(angmcmc)
export(bestcriterion)
export(bestmodel)
export(circ_cor)
export(circ_varcor_model)
export(contour_model)
export(d_fitted)
export(dvm)
export(dvmcos)
export(dvmcosmix)
export(dvmmix)
export(dvmsin)
export(dvmsinmix)
export(dwnorm)
export(dwnorm2)
export(dwnorm2mix)
export(dwnormmix)
export(extractsamples)
export(fit_angmix)
export(fit_incremental_angmix)
export(fit_vmcosmix)
export(fit_vmmix)
export(fit_vmsinmix)
export(fit_wnorm2mix)
export(fit_wnormmix)
export(fix_label)
export(is.angmcmc)
export(latent_allocation)
export(lpdtrace)
export(minuspi_to_pi)
export(paramtrace)
export(pointest)
export(r_fitted)
export(rvm)
export(rvmcos)
export(rvmcosmix)
export(rvmmix)
export(rvmsin)
export(rvmsinmix)
export(rwnorm)
export(rwnorm2)
export(rwnorm2mix)
export(rwnormmix)
export(select_chains)
export(surface_model)
export(zero_to_2pi)
import(graphics)
import(stats)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp)
importFrom(bridgesampling,bridge_sampler)
importFrom(coda,as.mcmc.list)
importFrom(future.apply,future_lapply)
importFrom(grDevices,colorRampPalette)
importFrom(gtools,rdirichlet)
importFrom(lattice,densityplot)
importFrom(lattice,wireframe)
importFrom(loo,loo)
importFrom(loo,waic)
importFrom(methods,is)
importFrom(mvtnorm,rmvnorm)
importFrom(parallel,detectCores)
importFrom(qrng,sobol)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
useDynLib(BAMBI, .registration = TRUE)

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