version 1.2.1

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: EHRtemporalVariability
 Type: Package
 Title: Delineating Temporal Dataset Shifts in Electronic Health Records
-Version: 1.2.0
-Date: 2023-12-15
+Version: 1.2.1
+Date: 2024-01-26
 Encoding: UTF-8
 Description: Functions to delineate temporal dataset shifts in Electronic Health 
              Records through the projection and visualization of dissimilarities 
@@ -39,7 +39,7 @@ Authors@R: c(
 Maintainer: Carlos Sáez <carsaesi@upv.es>
 RoxygenNote: 7.2.3
 URL: https://github.com/hms-dbmi/EHRtemporalVariability
-Packaged: 2023-12-15 19:10:51 UTC; Carlos
+Packaged: 2024-01-26 12:24:25 UTC; Carlos
 Author: Carlos Sáez [aut, cre],
   Alba Gutiérrez-Sacristán [aut],
   Isaac Kohane [aut],
@@ -49,4 +49,4 @@ Author: Carlos Sáez [aut, cre],
     (Spain) [cph],
   Department of Biomedical Informatics, Harvard Medical School [cph]
 Repository: CRAN
-Date/Publication: 2023-12-17 07:30:09 UTC
+Date/Publication: 2024-01-26 13:50:06 UTC

MD5

@@ -1,21 +1,21 @@
-5ff64d586d5ba10e38616e265de66fed *DESCRIPTION
+87ef758fa8f0dc8acb2bdbb5c155bcc4 *DESCRIPTION
 3d113347136ff8800e34bb85c10182e0 *LICENSE
 73c66e939014e2eb31c0160727c51ea6 *NAMESPACE
-ab2d8a331a51dd538cad893cd6f13bed *NEWS.md
+b017ae75ef7f75d89b49340ec5949e8d *NEWS.md
 c5635163fd0885e8f0ba80ae665b7fd8 *R/allClasses.R
 d36755fafd4856a4d151f4eb0a21e6fa *R/allGenerics.R
-b59755eb14070be485584f7a2b9dafc6 *R/allMethods.R
+516760f220093351a508176fcde01b1c *R/allMethods.R
 49fbb4e524eaed5adb7cbccd87a7b5e9 *R/estimateDataTemporalMap.R
 4f9963b2ddac05e638bf2ad5a0891d09 *R/estimateIGTTrajectory.R
 dd66613af711849ff0e2c9b290c44d00 *R/formatDate.R
 8461d11c5b1490f8fe832b19f2419a83 *R/icd9toPheWAS.R
 bed42ced71fe68c34673daf7af6581da *R/igtProjectionCore.R
 64064c10a01b033a82744026d135ab13 *R/jsdiv.R
-0dbe56390ea4f0ee5ee1ba7ca8fcaed9 *README.md
+9a1b4a0ec96644cfdb13584dbfcfe17b *README.md
 267df1d1416b47d3e277c31e1a446dcc *build/vignette.rds
 533967dad6ffd902db194a41a74d57e6 *inst/doc/EHRtemporalVariability.R
 b604eb7362179feeff2c9f911640d81b *inst/doc/EHRtemporalVariability.Rmd
-946cfce25368d58289d5ab1c0b009fb7 *inst/doc/EHRtemporalVariability.html
+bd1e0daac2b7df20b6197ce0e5e45e26 *inst/doc/EHRtemporalVariability.html
 ffdd5d6c98fa3f74c41c16db9887ca4e *inst/extdata/icd9mappingFile.csv
 4dc188b27fb4eccefcd063b67f4a4982 *inst/extdata/nhdsSubset.csv
 0d1727c2ac4faf1c457049b30a0a77ef *inst/extdata/variabilityDemoNHDSdiagcode1-phewascode.RData
@@ -31,7 +31,7 @@ e7cfe43fe5568736615e5ae59d94f21f *man/formatDate.Rd
 c0fe459247e37bcd339d760e1c3a4100 *man/trimDataTemporalMap-methods.Rd
 b604eb7362179feeff2c9f911640d81b *vignettes/EHRtemporalVariability.Rmd
 078f00dcd03fd1be2b41670f0b879cb5 *vignettes/EHRtemporalVariability.md
-0e0ee74bce85ec6d2e2fe31a13b1cc33 *vignettes/EHRtemporalVariabilityHelp.pdf
+dfdc6bbbb243a47ae96041efd7b75ae9 *vignettes/EHRtemporalVariabilityHelp.pdf
 1ed61e48f7830da361fa0f2323b07926 *vignettes/biomed-central.csl
 822e9838f2fb000a571d035f8ff6c16a *vignettes/createAutomaticPDFfunctions.R
 916ab609dd4638adcda671cc77767fba *vignettes/demoExportRDataForShinyApp.R

NEWS.md

@@ -1,3 +1,7 @@
+# EHRtemporalVariability 1.2.1
+
+* Updated plotDataTemporalMap function to conform to new specifications of the order() function to avoid possible warning or error when plotting character or factor data in alphabetical order.
+
 # EHRtemporalVariability 1.2.0
 
 * Updated to R 4.3.0.

R/allMethods.R

@@ -91,7 +91,7 @@ setMethod(f = "plotDataTemporalMap",
                   if (sortingMethod  %in% 'frequency'){
                       supportOrder = order(colSums(temporalMap, na.rm = TRUE),decreasing = TRUE)
                   } else {
-                      supportOrder = order(support,decreasing = FALSE)
+                      supportOrder = order(support[,1],decreasing = FALSE)
                   }
 
                   support = support[supportOrder,, drop = FALSE]

README.md

@@ -15,7 +15,7 @@ Our method is based upon the estimation and comparison of data statistical distr
 
 ## Package' Status
 
- * __Version__: 1.1.4
+ * __Version__: 1.2.0
  * __Authors__: Carlos Sáez (UPV-HMS), Alba Gutiérrez-Sacristán (HMS), Isaac Kohane (HMS), Juan M García-Gómez (UPV), Paul Avillach (HMS)
  * __Maintainer__: Carlos Sáez (UPV-HMS)