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version 1.0.7
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Ahmed Metwally authored and cran-robot committed Dec 17, 2017
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14 changes: 7 additions & 7 deletions DESCRIPTION
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Package: MetaLonDA
Type: Package
Title: Metagenomics Longitudinal Differential Abundance Method
Version: 1.0.5
Date: 2017-10-18
Author: Ahmed Metwally, Patricia Finn, Yang Dai, David Perkins
Description: Identify time intervals of differentially abundant metagenomics features in longitudinal studies <doi:10.1145/3107411.3107429>.
Author: Ahmed Metwally, Yang Dai, Patricia Finn, David Perkins
Maintainer: Ahmed Metwally <ametwa2@uic.edu>
Description: Identify time intervals of differentially abundant metagenomic features in longitudinal studies <doi:10.1145/3107411.3107429>.
License: GPL-2
Version: 1.0.7
Date: 2017-12-16
License: MIT + file LICENSE
Depends: R(>= 3.2.0)
Imports: ggplot2, gss, plyr, caTools, parallel, doParallel,
metagenomeSeq, DESeq2, edgeR
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Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Packaged: 2017-10-20 15:23:40 UTC; ahmedmetwally
Date/Publication: 2017-10-20 20:36:01 UTC
Packaged: 2017-12-16 23:08:05 UTC; ahmedmetwally
Date/Publication: 2017-12-17 06:53:51 UTC
2 changes: 2 additions & 0 deletions LICENSE
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YEAR: 2017
COPYRIGHT HOLDER: Ahmed Metwally
43 changes: 22 additions & 21 deletions MD5
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e957731f61503d887106cbde7168a717 *DESCRIPTION
fb48afc4efd890f82dde5fc84d02849a *NAMESPACE
a88ac42c120effed14c31e61d9ed694e *R/CurveFitting.R
a194a3e4cf23076feaebf68c330d5937 *R/Metalonda.R
cc965911a06d8a77ddc8a1f8ef255c95 *DESCRIPTION
f42794075dd6cff79b0e3017f79cb7ff *LICENSE
dab7c975a3313e7d7f26a8bd57d8f59b *NAMESPACE
8b2b82717f363a5ecfec5812a59aa211 *R/CurveFitting.R
53e2a078ee913172714dd3a4ac2b74e8 *R/Metalonda.R
a3d5a8aa94f98416121d075d21104896 *R/Normalization.R
824b78e4827c59feaaae0c1eb8584a28 *R/Permutation.R
9c3854773257e87dd4a3a4dc981e8a24 *R/Visualization.R
69f35f3adb87ac4c2d8985fda6782dd4 *R/metalonda_test_data.R
38ba5f5c8aa60d5c05b5d1bd8b2fbb1f *R/Permutation.R
df5557fb6c21d6f1355f58da4e5f067c *R/Visualization.R
0fef69ca0c788e0859225bf769872997 *R/metalonda_test_data.R
173a19ff73e64e4126b88c5c54164993 *data/metalonda_test_data.RData
cde06f2321589f8404dd5c627ca19edb *man/areaPermutation.Rd
625e54a4040ef4ebfd549233ce4cfb94 *man/curveFitting.Rd
fb53395fc2b723cf2472947ba16170d3 *man/findSigInterval.Rd
9b5b272a958e9affe0ca077683f070d6 *man/intervalArea.Rd
ad0b35fc2cb201b590a6d79d3ae04959 *man/metalonda.Rd
6128c195e1ccc4851752ceee27d951f3 *man/metalondaAll.Rd
36892b451bf76a659402bc17b2ac4f09 *man/metalonda_test_data.Rd
1f368ea253ab297ace72cf1283758871 *man/normalize.Rd
790abc90c296c835fc34a54cc1bbaf69 *man/permutation.Rd
a63bd3590a3776ec6fb72d746d659214 *man/visualizeARHistogram.Rd
32ea5bebfb4ae1d60cc7c39516597f95 *man/visualizeArea.Rd
8d72f18cc08070db702ff2c48f4e79de *man/visualizeFeature.Rd
b4e435fc7cb695d2ca8e3049ede186da *man/visualizeFeatureSpline.Rd
f46b25f4ce23aee80b2d2c3a5d4e16b6 *man/visualizeTimeIntervals.Rd
ae0badaeeb624c5846a51f8b77424cb6 *man/areaPermutation.Rd
06b8743d8280b455472ce1e144d05117 *man/curveFitting.Rd
bf153adba0551d101d5ef970b1a1e1ed *man/findSigInterval.Rd
c0fc2ce1123ca6266bfc8c01bbbe0bc9 *man/intervalArea.Rd
10f23d227a67f84c981f8c3d616c76f3 *man/metalonda.Rd
9b2602c2b5e61497aba5cf8207f6a041 *man/metalondaAll.Rd
e674c6406d9945d6b63e471aee4fdba5 *man/metalonda_test_data.Rd
9361ed42ceaefb0295eb6e1f6f980b01 *man/normalize.Rd
bc3b9452bc15b78a9fbb0d0ac8afdb28 *man/permutation.Rd
fda8e4b551408c514c3051106b345df5 *man/visualizeARHistogram.Rd
bb6ee087b6b81564ad8d6144c53e4e07 *man/visualizeArea.Rd
8a6df895aed32ba27a5c1bbda5356c46 *man/visualizeFeature.Rd
38cf9426235a6e52e57e193088fa3354 *man/visualizeFeatureSpline.Rd
ccaa7ae4bced271486279548f8088b9b *man/visualizeTimeIntervals.Rd
50 changes: 25 additions & 25 deletions NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(areaPermutation)
export(curveFitting)
export(findSigInterval)
export(intervalArea)
export(metalonda)
export(metalondaAll)
export(normalize)
export(permutation)
export(visualizeARHistogram)
export(visualizeArea)
export(visualizeFeature)
export(visualizeFeatureSpline)
export(visualizeTimeIntervals)
import(caTools)
import(doParallel)
import(ggplot2)
import(grDevices)
import(graphics)
import(gss)
import(parallel)
import(plyr)
import(stats)
import(utils)
# Generated by roxygen2: do not edit by hand

export(areaPermutation)
export(curveFitting)
export(findSigInterval)
export(intervalArea)
export(metalonda)
export(metalondaAll)
export(normalize)
export(permutation)
export(visualizeARHistogram)
export(visualizeArea)
export(visualizeFeature)
export(visualizeFeatureSpline)
export(visualizeTimeIntervals)
import(caTools)
import(doParallel)
import(ggplot2)
import(grDevices)
import(graphics)
import(gss)
import(parallel)
import(plyr)
import(stats)
import(utils)

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