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| Package: PAICE | ||
| Type: Package | ||
| Title: Phylogeographic Analysis of Island Colonization Events | ||
| Version: 1.0.1 | ||
| Authors@R: | ||
| c( | ||
| person( | ||
| given = "Alberto J.", | ||
| family = "Coello", | ||
| role = c("aut", "cre"), | ||
| email = "albjcoello@gmail.com", | ||
| comment = c("ORCID = 0000-0002-2665-3726") | ||
| ), | ||
| person( | ||
| given = "Mario", | ||
| family = "Fernández-Mazuecos", | ||
| role = c("aut"), | ||
| comment = c("ORCID = 0000-0003-4027-6477") | ||
| ), | ||
| person( | ||
| given = "Ruben H.", | ||
| family = "Heleno", | ||
| role = c("aut"), | ||
| comment = c("ORCID = 0000-0002-4808-4907") | ||
| ), | ||
| person( | ||
| given = "Pablo", | ||
| family = "Vargas", | ||
| role = c("aut"), | ||
| comment = c("ORCID = 0000-0003-4502-0382") | ||
| ) | ||
| ) | ||
| Depends: R (>= 3.6.0) | ||
| Suggests: spelling, testthat | ||
| Description: Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. (2022) <doi:10.1111/jbi.14341>. | ||
| License: GPL-2 | ||
| Encoding: UTF-8 | ||
| LazyData: true | ||
| Date: 2023-11-12 | ||
| URL: <https://github.com/PAICEcode/PAICE> | ||
| BugReports: https://github.com/PAICEcode/PAICE/issues | ||
| RoxygenNote: 7.2.3 | ||
| NeedsCompilation: no | ||
| Packaged: 2023-11-12 11:55:24 UTC; Alberto | ||
| Language: en-US | ||
| Author: Alberto J. Coello [aut, cre] (ORCID = 0000-0002-2665-3726), | ||
| Mario Fernández-Mazuecos [aut] (ORCID = 0000-0003-4027-6477), | ||
| Ruben H. Heleno [aut] (ORCID = 0000-0002-4808-4907), | ||
| Pablo Vargas [aut] (ORCID = 0000-0003-4502-0382) | ||
| Maintainer: Alberto J. Coello <albjcoello@gmail.com> | ||
| Repository: CRAN | ||
| Date/Publication: 2023-11-13 17:33:29 UTC |
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| 56bdefec269e68756bd60766473ecdbe *DESCRIPTION | ||
| 69547d536fed8d939a716312b02f148b *NAMESPACE | ||
| 720246fa2a8487055b72dc0d1e1f57aa *R/PAICE.R | ||
| 6d4ea1a474bb6f8a1cef9bf54c4a17cf *R/colonization.R | ||
| 37d13cff8b90d71b9e83e1c3593b67c6 *R/geneticResampling.R | ||
| a01615edf3e2bb1f2c23144a11ae7e9c *R/maxCol.R | ||
| d30a54e1d66958784f68113893b094b3 *R/plot.maxCol.R | ||
| 5144cc225b86b35bb872ec7644fc6a18 *R/plot.rarecol.R | ||
| e174a14a2e5f1c02a86e62bc2623823f *R/print.colonization.R | ||
| 8954ef0050d56c602cfe7527c129640c *R/print.maxCol.R | ||
| 456982498284ca99100708afa2d6ed0f *R/rarecol.R | ||
| a2fbfa7da5a9d1dc5670a21f62480005 *R/read.rarecol.R | ||
| 60687f3d25f2666ee10250265338ade8 *R/summary.colonization.R | ||
| 3d399b1ef81871b693fc0e9285d9732e *R/summary.maxCol.R | ||
| 9bf9030d7172251bbc959ec6fc66e69d *R/zzz.R | ||
| 5e257ae6964ea011fab70ee75e3246f0 *data/CmonsData.RData | ||
| 8f3645c92ef925d75738135e286bba15 *data/CmonsNetwork.RData | ||
| 2cff3eb3497c98b8bbdddd51ade392f4 *data/CmonsRare.RData | ||
| d58e80aeabb97ac7be5a575373929323 *inst/CITATION | ||
| cf859da10603077d9dd721f7b7ece635 *inst/WORDLIST | ||
| 77d4ea965710a86421faa269ba8cac57 *man/CmonsData.Rd | ||
| 0bf58712fd23a71c9716144b45155694 *man/CmonsNetwork.Rd | ||
| 448a8a8477850caa3dfb5baf5f4598b0 *man/CmonsRare.Rd | ||
| 2cd1715a96e307c30a54af94fd8681db *man/PAICE.Rd | ||
| e4d34e3589339c344b68eb76c87c2993 *man/colonizations.Rd | ||
| f41de3ab80b4ee08565751062df05884 *man/dot-onAttach.Rd | ||
| f2b2dfab7f63e630108f985a8827c704 *man/geneticResampling.Rd | ||
| 613b91eb251fffb1c4da259cddf1069c *man/maxCol.Rd | ||
| 885536c96d974def84d75080980abba4 *man/plot.maxCol.Rd | ||
| 818be831fa4743404867d5d192a35cd8 *man/plot.rarecol.Rd | ||
| 794310be6295007ecc19102d60181926 *man/rarecol.Rd | ||
| a261e5a2d01cc108814d3b4f22476c8f *man/read.rarecol.Rd | ||
| 332173f20d20942c02019350ea4dcadc *tests/spelling.R | ||
| 97047b8fc1e4985bdcf2593bf933a137 *tests/testthat/test.basic.R | ||
| 2cea02fbab6c9028cdc9c373f0e44d4e *tests/testthat/test.namespace.R |
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| # Generated by roxygen2: do not edit by hand | ||
|
|
||
| S3method(plot,maxCol) | ||
| S3method(plot,rarecol) | ||
| S3method(print,colonization) | ||
| S3method(print,maxCol) | ||
| S3method(summary,colonization) | ||
| S3method(summary,maxCol) | ||
| export(colonization) | ||
| export(geneticResampling) | ||
| export(maxCol) | ||
| export(rarecol) | ||
| export(read.rarecol) | ||
| importFrom(grDevices,colorRampPalette) | ||
| importFrom(grDevices,devAskNewPage) | ||
| importFrom(grDevices,palette) | ||
| importFrom(graphics,arrows) | ||
| importFrom(graphics,axis) | ||
| importFrom(graphics,box) | ||
| importFrom(graphics,curve) | ||
| importFrom(graphics,legend) | ||
| importFrom(graphics,lines) | ||
| importFrom(graphics,mtext) | ||
| importFrom(graphics,par) | ||
| importFrom(graphics,plot) | ||
| importFrom(graphics,plot.default) | ||
| importFrom(graphics,points) | ||
| importFrom(graphics,rect) | ||
| importFrom(graphics,text) | ||
| importFrom(graphics,title) | ||
| importFrom(stats,aggregate) | ||
| importFrom(stats,confint) | ||
| importFrom(stats,nls) | ||
| importFrom(stats,quantile) | ||
| importFrom(utils,read.csv) | ||
| importFrom(utils,write.table) |
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| #' PAICE: Phylogeographic Analysis of Colonization Events | ||
| #' | ||
| #' PAICE package has three main functions: | ||
| #' colonizations, rarecol and maxCol | ||
| #' | ||
| #' @section Foo functions: | ||
| #' The foo functions ... | ||
| #' | ||
| #' @docType package | ||
| #' @name PAICE | ||
| NULL |
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