-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
0 parents
commit 1b0bf4d
Showing
66 changed files
with
10,445 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| Package: SemiSupervised | ||
| Type: Package | ||
| Title: Safe Semi-Supervised Learning Tools | ||
| Version: 1.0 | ||
| Date: 2018-5-07 | ||
| Author: Mark Vere Culp | ||
| Maintainer: Mark Vere Culp <mvculp@mail.wvu.edu> | ||
| Depends: R (>= 2.10),methods | ||
| Suggests: caret,mlbench,kernlab,randomForest,glmnet,spa,e1071 | ||
| LazyLoad: Yes | ||
| Description: Implements several safe graph-based semi-supervised learning algorithms. The first algorithm is the Semi-Supervised Semi-Parametric Model (S4PM) and the fast Anchor Graph version of this approach. For additional technical details, refer to Culp and Ryan (2013) <http://jmlr.org/papers/v14/culp13a.html>, Ryan and Culp (2015) <http://www.jmlr.org/papers/v16/ryan15a.html> and the package vignette. The underlying fitting routines are executed in C++. All tuning parameter estimation is optimized using K-fold Cross-Validation. | ||
| License: GPL-2 | ||
| NeedsCompilation: yes | ||
| Repository: CRAN | ||
| Packaged: 2018-05-09 18:36:30 UTC; mculp | ||
| Date/Publication: 2018-05-11 09:59:25 UTC |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,65 @@ | ||
| 295f143a4de737f28b1d9e7b0ce243b2 *DESCRIPTION | ||
| 2828319ec6d1592799b2c4fda2dad579 *NAMESPACE | ||
| 222bc2e1f5850ffd4af2764fc4f494fb *R/A_SemiSupervised-objects.R | ||
| 891a9f3a93b4ddf0de3bb4ac164d7610 *R/SemiSupervised-external.R | ||
| f5d5f355222c005203ab5eea5f9f9cdf *R/SemiSupervised-internal.R | ||
| 6a1c4c5e609028f02c710e64cc88d38b *R/agraph-external.R | ||
| 093a7d11a90cd28eaf02452d200695e1 *R/agraph-internal.R | ||
| 0d9a30b5c0aae0260b75f0fcc73cc80d *R/jtharm-external.R | ||
| fb98223e4c98d75ca51a2fe3384bc666 *R/jtharm-internal.R | ||
| fa5d7a2dbfca0af3e72404f3084fac32 *R/s4pm-external.R | ||
| 42aea3df3dc6fe6063a6ecdc5580e65e *R/s4pm-internal.R | ||
| 3ad9fd50bef159f13b3af3bc0ff91d46 *build/vignette.rds | ||
| e847b72bf7b5ae52f98942ea2ccc91c2 *data/powerplant.rda | ||
| 6444b4777f64c0d64fa0ca4f2ae468f9 *demo/00Index | ||
| c4822d776710ed3f68ed209e2850e762 *demo/SemiSupervised.R | ||
| 53257358fed79064638115c33eac8cd9 *inst/doc/SemiSupervised.Rnw | ||
| 7ad75a67c3a9ecefc08541ea5339a229 *inst/doc/SemiSupervised.pdf | ||
| 4faa91a89978a46632a22e3a85833e81 *inst/document_code/Generate_Figures.R | ||
| 951bba25b20d1e929c6f512c4384abf4 *inst/document_code/Generate_Tables.R | ||
| 22a14bbae95e01eb03b8861f7ea76a85 *inst/document_code/README.txt | ||
| d5b7b20fa3ad74238128b517bf329cd5 *inst/document_code/csvs/casp_CPU.csv | ||
| 3a4614a1efe2912e25c101356f7d3219 *inst/document_code/csvs/casp_change_m.csv | ||
| 241763063f8b0f0265571629e5c8d8ab *inst/document_code/csvs/perf_results.csv | ||
| 0fa3e96afe09612ac7bab8f08441d566 *inst/document_code/run_casp_CPU.R | ||
| 67f6f90417a732290291a28cabe40b74 *inst/document_code/run_casp_m.R | ||
| ff5f8be7ef89224c5432fb6cb1a28990 *inst/document_code/run_perforamcne.R | ||
| caff88e0e5ab4ee2deee5bb8e34f6226 *inst/document_code/source/base.R | ||
| fc774368d6c6a707c218ea043e2d93a9 *inst/document_code/source/data_reader.R | ||
| 84e0e821eadc4b52deec1a60b104cd3c *man/AnchorGraph.Rd | ||
| 47489aad4e541ab5539cc0cee81f9ebc *man/SemiSupervised-class.Rd | ||
| 8a518dc2949dd61d70e21aaf625634f1 *man/SemiSupervised.control.Rd | ||
| b4098c0eb9676e537e9415e65c3467be *man/agraph-class.Rd | ||
| 85cc31984483ddeef3406977f8bdbb4f *man/agraph.Rd | ||
| 0b16e948ecd1037c2f425d009af83450 *man/cv.folds.Rd | ||
| 7822f595602ccf5b83ad8fcb1f8f1c83 *man/dG.Rd | ||
| dd710550f347492888440c9e951a2dde *man/impute.median.Rd | ||
| 8d3dba44bce81552956defd8a5ebb64d *man/jtharm-class.Rd | ||
| 901d92e7691e8402a47b95f5ace3fd32 *man/jtharm.Rd | ||
| c5df96223f3b0f915072249c6ca8e2d9 *man/knnGraph.Rd | ||
| d0a841f9f4aa1111c6f957b4d343ca68 *man/powerplant.Rd | ||
| 49c12e55578920efc1a4eb7e33e4ce1e *man/predict.agraph.Rd | ||
| 1780bc90906d99eb925bd8f3542738cf *man/predict.jtharm.Rd | ||
| 1832272a84ea162647b3fcd016e4f0ed *man/predict.s4pm.Rd | ||
| b0d24806855681f643523b9b406897c4 *man/s4pm-class.Rd | ||
| ee08a496eba159ee0f2de30bf6c6ab3f *man/s4pm.Rd | ||
| a2b1c960916bcb6c13df3f893a557241 *man/x.scaleL.Rd | ||
| 4706e6fcaa5b25fec18d91b87d6cd2c5 *src/Anchor_Reg.c | ||
| e84d0733e0a7aa1e3f78a3b142a19eee *src/Anchor_Reg.h | ||
| 270770188decaad651d1eabb3fb3b863 *src/LAE.c | ||
| fa5292b8172854610c6bb85fd86076bb *src/LAE.h | ||
| 2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars | ||
| 8304157c6b2083ebd369eb5fdb0b7b7e *src/general.c | ||
| 9d54c4e82b79a58f027715d4fa454c28 *src/general.h | ||
| 72a5911d6aed23c08696c036f7005ea0 *src/joint_harmonic.c | ||
| 6efac7dae71afb1da0fed59f4e752e45 *src/joint_harmonic.h | ||
| 6f3ba6d17963292201fdd6ca4529a5cd *src/s4pm.c | ||
| 7436e57f84c3911c13afc8679b0b303a *src/s4pm.h | ||
| 17a88293b73a58f5e0eead21a46487e2 *src/win_defs.c | ||
| 7167c5b3fa63b759fa52b2692f887385 *src/win_defs.h | ||
| 53257358fed79064638115c33eac8cd9 *vignettes/SemiSupervised.Rnw | ||
| e20a446d5206887a2b7e97b137b76d3d *vignettes/SemiSupervised.bib | ||
| 851b1e8cdc8913b1d99a0bb60b37a25e *vignettes/fig1a.pdf | ||
| 585e97d695db445b591ee3c8d5097356 *vignettes/fig1b.pdf | ||
| 60aa9f24585fe0541eaa651a20dc4c9e *vignettes/fig_time1.pdf | ||
| 939c21ca220255fc5a905590bda72796 *vignettes/fig_time2.pdf |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,53 @@ | ||
| useDynLib("SemiSupervised",.registration=TRUE,.fixes = "C_") | ||
| import("methods") | ||
| importFrom("stats", "as.formula", "delete.response", "dist", "kmeans", | ||
| "median", "model.frame", "model.matrix", "model.response", | ||
| "na.pass", "quantile", "terms","na.omit") | ||
| export( | ||
| "agraph", | ||
| "agraph.default", | ||
| "jtharm", | ||
| "jtharm.default", | ||
| "s4pm", | ||
| "s4pm.default", | ||
| "SemiSupervised.control", | ||
| "AnchorGraph", | ||
| "knnGraph", | ||
| "kgraph.predict", | ||
| "kgraph.symm", | ||
| "epsGraph", | ||
| "eps.predict", | ||
| "eps.symm", | ||
| "impute.median", | ||
| "dG", | ||
| "sG", | ||
| "aG", | ||
| "x.scaleL", | ||
| "getAnchor", | ||
| "cv.folds", | ||
| "h.est", | ||
| "extract.a", | ||
| "extract.xg", | ||
| "extract.g", | ||
| "inter.predict", | ||
| "euclidDist", | ||
| "cosineDist", | ||
| "ymatrix", | ||
| "xmatrix", | ||
| "gmatrix", | ||
| "measures", | ||
| "type", | ||
| "lparm", | ||
| "gparm", | ||
| "hparm", | ||
| "ymatrix<-", | ||
| "xmatrix<-", | ||
| "gmatrix<-", | ||
| "measures<-", | ||
| "type<-", | ||
| "lparm<-", | ||
| "gparm<-", | ||
| "hparm<-") | ||
|
|
||
| exportMethods("fitted","dim","show","predict") | ||
| exportClasses("SemiSupervised","parm") |
Oops, something went wrong.