version 1.4.2

cran · Feb 15, 2010 · a9d45f8 · a9d45f8
1 parent 5039d2b
commit a9d45f8
Show file tree

Hide file tree

Showing 14 changed files with 98 additions and 714 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,10 +1,15 @@
 Package: bifactorial
-Version: 1.4.1
-Date: 2008-09-29
+Version: 1.4.2
+Date: 2010-02-15
 Author: Peter Frommolt
 Maintainer: Peter Frommolt <peter.frommolt@uni-koeln.de>
 Title: Inferences for bi- and trifactorial trial designs
-Depends: mvtnorm,multcomp,lattice,graphics,methods
-Description: This package makes global and multiple inferences for given bi- and trifactorial clinical trial designs using bootstrap methods and a classical approach.
+Depends: mvtnorm,multcomp,lattice,graphics,methods,Rcpp (>= 0.7.4)
+Description: This package makes global and multiple inferences for
+        given bi- and trifactorial clinical trial designs using
+        bootstrap methods and a classical approach.
+URL: http://portal.ccg.uni-koeln.de
 License: GPL
-Packaged: Mon Sep 29 09:32:49 2008; pf
+Packaged: 2010-02-16 08:27:02 UTC; frommolt
+Repository: CRAN
+Date/Publication: 2010-02-16 09:36:45
diff --git a/man/avemax.Rd b/man/avemax.Rd
@@ -69,6 +69,9 @@ maxtest(C,test=NULL,method="bootstrap",nboot=NULL,simerror=NULL,...)
   \item{call}{The function call.}
 }
 \references{
+  Frommolt P, Hellmich M (2009): Resampling in multiple-dose factorial
+  designs. Biometrical J 51(6), pp. 915-31
+
   Hellmich M, Lehmacher W (2005): Closure procedures for monotone
   bi-factorial dose-response designs. Biometrics 61, pp. 269-276
 
@@ -79,12 +82,12 @@ maxtest(C,test=NULL,method="bootstrap",nboot=NULL,simerror=NULL,...)
   fixed-dose combination drug studies. Biometrics 53, pp. 498-503
   
   Hung HMJ (2000): Evaluation of a combination drug with multiple doses
-  in unbalanced factorial design clinical trials. Statistics in Medicine
+  in unbalanced factorial design clinical trials. Statist Med
   19, pp. 2079-2087
 }
 \author{
   Peter Frommolt, University of Cologne \email{peter.frommolt@uni-koeln.de}\cr
-  \url{http://www.medizin.uni-koeln.de/kai/imsie/peter.frommolt/}  
+  \url{http://portal.ccg.uni-koeln.de}
 }
 \note{
   The performance of the bootstrap-based approach and the method from Hung

diff --git a/man/bifactorial.Rd b/man/bifactorial.Rd
@@ -49,11 +49,14 @@
   available by the generic functions \code{avetest} and \code{maxtest}.
 }
 \author{Peter Frommolt, University of Cologne \email{peter.frommolt@uni-koeln.de}\cr
-  \url{http://www.medizin.uni-koeln.de/kai/imsie/homepages/peter.frommolt/}
+  \url{http://portal.ccg.uni-koeln.de}
 }
 \references{
   Bretz F, Genz A, Hothorn LA (2001): On the numerical availability of
-  multiple comparison procedures. Biometrical Journal 43/5, pp. 645-656
+  multiple comparison procedures. Biometrical J 43/5, pp. 645-656
+
+  Frommolt P, Hellmich M (2009): Resampling in multiple-dose factorial
+  designs. Biometrical J 51(6), pp. 915-31
 
   Hellmich M, Lehmacher W (2005): Closure procedures for monotone bi-factorial
   dose-response designs. Biometrics 61, pp. 269-276
@@ -65,14 +68,14 @@
   fixed-dose combination drug studies. Biometrics 53, pp. 498-503
 
   Hung HMJ (2000): Evaluation of a combination drug with multiple doses in
-  unbalanced factorial design clinical trials. Statistics in Medicine
+  unbalanced factorial design clinical trials. Statist Med
   19, pp. 2079-2087
 
   Laska EM, Meisner MJ (1989): Testing whether an identified treatment is
   best. Biometrics 45, pp. 1139-1151
 
   Snapinn SM (1987): Evaluating the efficacy of a combination
-  therapy. Statistics in Medicine 6, pp. 657-665
+  therapy. Statist Med 6, pp. 657-665
 
   Westfall PH, Young SS (1993): Resampling-based multiple testing. John
   Wiley & Sons, Inc., New York

diff --git a/man/carpetcube.Rd b/man/carpetcube.Rd
@@ -55,6 +55,9 @@ cube(data,D,...)
   \item{n}{Numeric vector of sample sizes in the respective groups.}
 }
 \references{
+  Frommolt P, Hellmich M (2009): Resampling in multiple-dose factorial
+  designs. Biometrical J, 51(6), pp. 915-31
+
   Hung HMJ, Chi GYH, Lipicky RJ (1993): Testing for the existence of a
   desirable dose combination. Biometrics 49, pp. 85-94
 
@@ -63,7 +66,7 @@ cube(data,D,...)
   Medicine 19, pp. 2079-2087
 }
 \author{Peter Frommolt, University of Cologne \email{peter.frommolt@uni-koeln.de}\cr
-  \url{http://www.medizin.uni-koeln.de/kai/imsie/homepages/peter.frommolt/}
+  \url{http://portal.ccg.uni-koeln.de}
 }
 \seealso{\code{\link{bifactorial}}, \code{\link{mintest}},
   \code{\link{margint}}, \code{\link{avetest}}, \code{\link{maxtest}}}

diff --git a/man/multinf.Rd b/man/multinf.Rd
@@ -108,15 +108,17 @@ margint(C,test=NULL,method="bootstrap",nboot=NULL,simerror=NULL,
   \item{call}{Function call.}
 }
 \references{
+  Frommolt P, Hellmich M (2009): Resampling in multiple-dose factorial
+  designs. Biometrical J 51(6), pp. 915-31
+
   Hung HMJ, Chi GYH, Lipicky RJ (1993): Testing for the existence of a
   desirable dose combination. Biometrics 49, pp. 85-94
 
   Hung HMJ, Wang SJ (1997): Large-sample tests for binary outcomes in
   fixed-dose combination drug studies. Biometrics 53, pp. 498-503
 
   Hung HMJ (2000): Evaluation of a combination drug with multiple doses in
-  unbalanced factorial design clinical trials. Statistics in Medicine
-  19, pp. 2079-2087
+  unbalanced factorial design clinical trials. Statist Med 19, pp. 2079-2087
 
   Hellmich M, Lehmacher W (2005): Closure procedures for monotone bi-factorial
   dose-response designs. Biometrics 61, pp. 269-276
@@ -125,13 +127,13 @@ margint(C,test=NULL,method="bootstrap",nboot=NULL,simerror=NULL,
   best. Biometrics 45, pp. 1139-1151
 
   Snapinn SM (1987): Evaluating the efficacy of a combination
-  therapy. Statistics in Medicine 6, pp. 657-665
+  therapy. Statist Med 6, pp. 657-665
   
   Westfall PH, Young SS (1993): Resampling-based multiple testing. John
   Wiley & Sons, Inc., New York
 }
 \author{Peter Frommolt, University of Cologne \email{peter.frommolt@uni-koeln.de}\cr
-  \url{http://www.medizin.uni-koeln.de/kai/imsie/homepages/peter.frommolt/}
+  \url{http://portal.ccg.uni-koeln.de}
 }
 \note{
   Performance of the implemented methods has been evaluated and compared. The min-test performs very

diff --git a/src/Makevars b/src/Makevars
@@ -0,0 +1,2 @@
+PKG_CPPFLAGS = -I. `${R_HOME}/bin/Rscript -e "Rcpp:::CxxFlags()"`
+PKG_LIBS = `${R_HOME}/bin/Rscript -e "Rcpp:::LdFlags()"`
diff --git a/src/Makevars.win b/src/Makevars.win
@@ -0,0 +1,2 @@
+PKG_LIBS = `Rscript -e 'Rcpp:::LdFlags()'`
+PKG_CXXFLAGS = `Rscript -e 'Rcpp:::CxxFlags()'` -I.