version 1.0.6

DESCRIPTION

@@ -3,7 +3,7 @@ License: GPL (>= 2)
 Title: Object-Oriented Implementation of CRM Designs
 LazyLoad: yes
 Authors@R: c(
-  person("Daniel", "Sabanes Bove", email = "daniel.sabanes_bove@roche.com", role = c("aut", "cre")),
+  person("Daniel", "Sabanes Bove", email = "daniel.sabanes_bove@rconis.com", role = c("aut", "cre")),
   person("Wai", "Yin Yeung", email = "winnie.yeung@roche.com", role = c("aut")),
   person("Giuseppe", "Palermo", email = "giuseppe.palermo@roche.com", role = c("aut")),
   person("Thomas", "Jaki", email = "jaki.thomas@gmail.com", role = c("aut")))
@@ -16,10 +16,10 @@ Description: Implements a wide range of model-based dose
     designs for comparison or models with non-Bayesian estimation. The whole
     package is written in a modular form in the S4 class system, making it very
     flexible for adaptation to new models, escalation or stopping rules.
-Version: 1.0.5
+Version: 1.0.6
 Copyright: F. Hoffmann-La Roche Ltd
-URL: https://github.com/roche/crmPack
-BugReports: https://github.com/roche/crmPack/issues
+URL: https://github.com/openpharma/crmPack
+BugReports: https://github.com/openpharma/crmPack/issues
 VignetteBuilder: knitr
 Depends: R (>= 3.0.0), ggplot2 (>= 2.0.0), graphics
 Imports: methods, grid, gridExtra, GenSA, mvtnorm, parallel, rjags,
@@ -34,11 +34,11 @@ Collate: 'helpers.R' 'Data-class.R' 'Data-methods.R' 'Rules-class.R'
 RoxygenNote: 7.2.1
 Encoding: UTF-8
 NeedsCompilation: no
+Packaged: 2024-06-26 14:04:16 UTC; sabanesd
 Author: Daniel Sabanes Bove [aut, cre],
   Wai Yin Yeung [aut],
   Giuseppe Palermo [aut],
   Thomas Jaki [aut]
-Maintainer: Daniel Sabanes Bove <daniel.sabanes_bove@roche.com>
+Maintainer: Daniel Sabanes Bove <daniel.sabanes_bove@rconis.com>
 Repository: CRAN
-Packaged: 2024-02-04 20:38:10 UTC; sabanesd
-Date/Publication: 2024-02-04 21:20:02 UTC
+Date/Publication: 2024-06-26 15:00:14 UTC

MD5

@@ -1,6 +1,6 @@
-58ae31c85e216ff3b58ad8ae2bffef89 *DESCRIPTION
+02a984cebe6ca682fb4c87e74b31022d *DESCRIPTION
 7f14151cfd4e626d8f10d0833a8f2f38 *NAMESPACE
-4a164888072add7485e656a43d59a16e *NEWS.md
+b93b8a1487ed1fcb4b1201e87e39cf83 *NEWS.md
 5bc17c942ef3613dd9ea1b07a8a04403 *R/Data-class.R
 37d6176ab7374d1b96326731e9588057 *R/Data-methods.R
 51b0cbe01afbc0568a75b8ca3dda82ac *R/Design-class.R
@@ -14,19 +14,19 @@ e6a685bf63b143ebbbbb353f57f1ca48 *R/Rules-class.R
 a3af2478e645d2b776f348e7afc69622 *R/Samples-class.R
 34d9007546e1eeee0a9dc852c2b06afb *R/Samples-methods.R
 0bad6e85f08a91435775ce942a0ecaab *R/Simulations-class.R
-bcf5c7f82f632f763fdc6922aa61fd90 *R/Simulations-methods.R
-89efd30c924c15f5b116fb55ded8948f *R/crmPack-package.R
+b03bb64761225b5fe600483fb75a9882 *R/Simulations-methods.R
+2e4b34b07511b9d9a20b6b5ba95ea067 *R/crmPack-package.R
 12617ce14c3bae405c420e4fe59dac2f *R/fromQuantiles.R
 e4d8a4cdf04c12b81b35e7621923fcf7 *R/helpers.R
 aeb8fb809b4900e2214830ffb031fb28 *R/mcmc.R
 cde004486167d0fffc340ea225754432 *R/writeModel.R
-6d5fbbbe28351ef98691adcaceece08b *build/vignette.rds
+ac0014bd58fdb433d924c6cb46fca9f8 *build/vignette.rds
 a7307852642c7b613eea2e4165179ef7 *inst/CITATION
 bda97dc0ec073b0d98363db60afe48be *inst/doc/example.R
 df2d62aeca5444fa2e97339a9948a216 *inst/doc/example.Rnw
-2918973858b1a32e267e46d21a926163 *inst/doc/example.pdf
-9dc67af835ba23732a0327607b4ebdee *inst/doc/guidelines.Rmd
-584fd12f3992c8f241c93a763e41209d *inst/doc/guidelines.html
+248c79731860277fc2a18c8f78efc025 *inst/doc/example.pdf
+6a8ad3e941d5881b6ee9d5ba8d93a879 *inst/doc/guidelines.Rmd
+1eb5859797c58379ef7f7ab123e81bda *inst/doc/guidelines.html
 f35a724a7d40339378e842daa9a5b27c *man/AllModels-class.Rd
 523b8a19314b199fda6dcbe7aeb1ab8a *man/CohortSize-class.Rd
 f8b33b1071a94284cea3798572fc43a8 *man/CohortSizeConst-class.Rd
@@ -188,7 +188,7 @@ dcdb68214dfa88897b00bc0ea9d27224 *man/and-Stopping-StoppingAll-method.Rd
 07c92add526a157757244d3a0bddf606 *man/approximate.Rd
 c0c5a6bca61d6ef2ca13ab59d4607078 *man/as.list-GeneralData-method.Rd
 cccb7e94f4ea5ce639a8eeacab0458c7 *man/biomLevel.Rd
-65ccea7c5c65ae236b9823b4c3c3da0f *man/crmPack-package.Rd
+0d350a9abc532e326d415925cf86bbb3 *man/crmPack-package.Rd
 9e374e2d90ea7cab66c65bf74fd2f29e *man/crmPackExample.Rd
 1f7db5ce802149937f567f1bd89ab058 *man/crmPackHelp.Rd
 8bf569490864c148aba3fbe47dcfb9e2 *man/dinvGamma.Rd
@@ -229,19 +229,19 @@ cfd83a2b8694cf49730588c06d9241be *man/plot-Data-ModelTox-method.Rd
 298b6f3b67d3ad8b74758612bb6ed71d *man/plot-Data-missing-method.Rd
 7f083439c3585d601ca5f4dc3ad4f3bb *man/plot-DataDual-ModelEff-method.Rd
 9879f11329043e9f55ca4aecfb1a0370 *man/plot-DataDual-missing-method.Rd
-d34f1b6c1c098b0afdb6b162db19e869 *man/plot-DualSimulations-missing-method.Rd
-9952c3b3af552a0ece3491955407d626 *man/plot-DualSimulationsSummary-missing-method.Rd
-94a55d1b81ad20513841db0c0f3b33d5 *man/plot-GeneralSimulations-missing-method.Rd
-f71b2b9d20dd99491e9cb00b0c293fd4 *man/plot-GeneralSimulationsSummary-missing-method.Rd
-9edb514e5e7c11e96c77c16beccff453 *man/plot-PseudoDualFlexiSimulations-missing-method.Rd
-4cf7b46d1cc68ef98cc15972a41513a3 *man/plot-PseudoDualSimulations-missing-method.Rd
-f7aa673a5c6169a64148c5496daea7b5 *man/plot-PseudoDualSimulationsSummary-missing-method.Rd
-781e0e0c4264e19e4e431fd401a19c86 *man/plot-PseudoSimulationsSummary-missing-method.Rd
+f306f01727fc0328cde46953ac70fdf9 *man/plot-DualSimulations-missing-method.Rd
+5458ff43d37a191be1aa18f9c79fcd96 *man/plot-DualSimulationsSummary-missing-method.Rd
+1a6a17dc3ef2d44edacb157dc94254b5 *man/plot-GeneralSimulations-missing-method.Rd
+461f51a6a3fad5ec01cc899ad43ee555 *man/plot-GeneralSimulationsSummary-missing-method.Rd
+9fa8886cb31f061c11e5d11bc5c608ac *man/plot-PseudoDualFlexiSimulations-missing-method.Rd
+1d5dc984c3ed910d36dcfdf2c289c8a2 *man/plot-PseudoDualSimulations-missing-method.Rd
+bff99f09d32ac0aabe43c8225efc3521 *man/plot-PseudoDualSimulationsSummary-missing-method.Rd
+077b85840c8c34ec4e49e98bbc8b6d75 *man/plot-PseudoSimulationsSummary-missing-method.Rd
 f78de5f19032ce8de222e81351817958 *man/plot-Samples-DualEndpoint-method.Rd
 43f69d387a16584c6173d223b5dd1647 *man/plot-Samples-Model-method.Rd
 78f560489e71d38e9c908e7f74bab19e *man/plot-Samples-ModelEff-method.Rd
 5e6886100f8e3a648051c57ff7bae1b3 *man/plot-Samples-ModelTox-method.Rd
-480be930245e3970f8fc9b70da177b48 *man/plot-SimulationsSummary-missing-method.Rd
+c94af15b2546a144dd0a5df7382c728c *man/plot-SimulationsSummary-missing-method.Rd
 d61fa6ace37ca1c36129d7232f412cd0 *man/plot.gtable.Rd
 529da9a0b915d80f0e7ff0eada35057c *man/plotDualResponses.Rd
 c684dbb6324cff8a2c888cf040bc306e *man/plotGain.Rd
@@ -283,5 +283,5 @@ f9571074dfece56f31245a168949e69a *man/update-Effloglog-method.Rd
 bf8587845e584ad8445be4d593c8e231 *man/writeModel.Rd
 df2d62aeca5444fa2e97339a9948a216 *vignettes/example.Rnw
 d52a5ee2dd6d7843ed25cb4c3881129c *vignettes/example.bib
-9dc67af835ba23732a0327607b4ebdee *vignettes/guidelines.Rmd
+6a8ad3e941d5881b6ee9d5ba8d93a879 *vignettes/guidelines.Rmd
 7336885269de74e88f289194f7b44c62 *vignettes/tikzlibrarypositioning-plus.code.tex

NEWS.md

@@ -1,3 +1,7 @@
+# Version 1.0.6
+
+* Change maintainer's email address.
+
 # Version 1.0.5
 
 * Remove S-PLUS part from `writeModel()` to avoid using the deprecated `is.R()` function.

R/Simulations-methods.R

@@ -36,7 +36,7 @@
 ##' @param type the type of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 ggplot geom_step geom_bar aes xlab ylab
 ##' scale_linetype_manual
@@ -211,7 +211,7 @@ setMethod("plot",
 ##' @param type the type of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 qplot coord_flip scale_x_discrete
 ##' @importFrom gridExtra arrangeGrob
@@ -880,7 +880,7 @@ setMethod("show",
 ##' @param type the types of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 geom_histogram ggplot aes xlab ylab geom_line
 ##' scale_linetype_manual scale_colour_manual
@@ -1006,7 +1006,7 @@ setMethod("plot",
 ##' @param type the types of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 geom_histogram ggplot aes xlab ylab geom_line
 ##' scale_linetype_manual scale_colour_manual
@@ -1129,7 +1129,7 @@ setMethod("plot",
 ##' @param type the types of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 geom_histogram ggplot aes xlab ylab geom_line
 ##' scale_linetype_manual scale_colour_manual
@@ -1640,7 +1640,7 @@ setMethod("show",
 ##' @param type the types of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 geom_histogram ggplot aes xlab ylab geom_line
 ##' scale_linetype_manual scale_colour_manual
@@ -1843,7 +1843,7 @@ setMethod("plot",
 ##' @param type the type of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 ggplot geom_step geom_bar aes xlab ylab
 ##' scale_linetype_manual
@@ -1943,7 +1943,7 @@ setMethod("plot",
 ##' @param type the type of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 ggplot geom_step geom_bar aes xlab ylab
 ##' scale_linetype_manual
@@ -2307,7 +2307,7 @@ def=
 ##' @param type the types of plots you want to obtain.
 ##' @param \dots not used
 ##' @return A single \code{\link[ggplot2]{ggplot}} object if a single plot is
-##' asked for, otherwise a \code{\link{gridExtra}{gTree}} object.
+##' asked for, otherwise a \code{gtable} object.
 ##'
 ##' @importFrom ggplot2 geom_histogram ggplot aes xlab ylab geom_line
 ##' scale_linetype_manual scale_colour_manual

R/crmPack-package.R

@@ -17,7 +17,7 @@
 ##' @aliases crmPack
 ##' @docType package
 ##' @title Object-oriented implementation of CRM designs
-##' @author Daniel Sabanes Bove \email{daniel.sabanes_bove@@roche.com},
+##' @author Daniel Sabanes Bove \email{daniel.sabanes_bove@@rconis.com},
 ##' Wai Yin Yeung \email{winnie.yeung@@roche.com},
 ##' Giuseppe Palermo \email{giuseppe.palermo@@roche.com},
 ##' Thomas Jaki \email{jaki.thomas@@gmail.com}

inst/doc/guidelines.Rmd

@@ -48,7 +48,7 @@ Please note that this guideline is no longer up to date and will be revised shor
   - Run "pkgdown::build\_site()" in the R console to build the website
   - Commit and push changes to git repository to release the new website
 8. Create a tag for this release:
-  - Go to [https://github.com/roche/crmPack](https://github.com/roche/crmPack) and click on "releases" (top line, next to "commits", "branches" on the left and "contributor" on the right)
+  - Go to [https://github.com/openpharma/crmPack](https://github.com/openpharma/crmPack) and click on "releases" (top line, next to "commits", "branches" on the left and "contributor" on the right)
   - Click "Create a new release"
   - Type a version number for your release – this should be "v" followed immediately without blank by the package version number "x.y.z", i.e. e.g. "v1.0.3"
   - Select the master branch.