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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,45 +1,47 @@ | ||
| context("Testing write_h5 and read_h5") | ||
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| obj <- get_h5_test_data() | ||
| if (require("hdf5r")) { | ||
| obj <- get_h5_test_data() | ||
|
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| test_that("write_h5 and read_h5 works", { | ||
| file <- tempfile() | ||
| on.exit(file.remove(file)) | ||
| test_that("write_h5 and read_h5 works", { | ||
| file <- tempfile() | ||
| on.exit(file.remove(file)) | ||
|
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| write_h5(obj, file) | ||
| write_h5(obj, file) | ||
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| obj2 <- read_h5(file) | ||
| obj2 <- read_h5(file) | ||
|
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| testthat::expect_equivalent(obj2, obj) | ||
| }) | ||
| testthat::expect_equivalent(obj2, obj) | ||
| }) | ||
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| test_that("test_h5_installation works", { | ||
| expect_true(test_h5_installation()) | ||
| expect_message(test_h5_installation(detailed = TRUE), "HDF5 test successful") | ||
| test_that("test_h5_installation works", { | ||
| expect_true(test_h5_installation()) | ||
| expect_message(test_h5_installation(detailed = TRUE), "HDF5 test successful") | ||
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| expect_output(expect_error(test_h5_installation_write(detailed = TRUE, obj = list(x = print)))) | ||
| expect_output(expect_error(test_h5_installation_read(detailed = TRUE, file = tempfile()))) | ||
| expect_output(expect_error(test_h5_installation_equal(detailed = TRUE, obj = 1, obj2 = 2))) | ||
| }) | ||
| expect_output(expect_error(test_h5_installation_write(detailed = TRUE, obj = list(x = print)))) | ||
| expect_output(expect_error(test_h5_installation_read(detailed = TRUE, file = tempfile()))) | ||
| expect_output(expect_error(test_h5_installation_equal(detailed = TRUE, obj = 1, obj2 = 2))) | ||
| }) | ||
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| test_that("is_sparse works", { | ||
| expect_false(is_sparse(matrix(c(1:10)))) | ||
| test_that("is_sparse works", { | ||
| expect_false(is_sparse(matrix(c(1:10)))) | ||
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| m <- Matrix::Matrix(matrix(c(1:10)), sparse = FALSE) | ||
| expect_false(is_sparse(m)) | ||
| expect_true(is_sparse(methods::as(m, "CsparseMatrix"))) | ||
| expect_false(is_sparse(methods::as(m, "dgeMatrix"))) | ||
| }) | ||
| m <- Matrix::Matrix(matrix(c(1:10)), sparse = FALSE) | ||
| expect_false(is_sparse(m)) | ||
| expect_true(is_sparse(methods::as(m, "CsparseMatrix"))) | ||
| expect_false(is_sparse(methods::as(m, "dgeMatrix"))) | ||
| }) | ||
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| test_that("errors gracefully", { | ||
| file <- tempfile() | ||
| on.exit(file.remove(file)) | ||
| test_that("errors gracefully", { | ||
| file <- tempfile() | ||
| on.exit(file.remove(file)) | ||
|
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| h5file <- hdf5r::H5File$new(file, mode = "w") | ||
| h5file[["a"]] <- 1 | ||
| h5file$close_all() | ||
| h5file <- hdf5r::H5File$new(file, mode = "w") | ||
| h5file[["a"]] <- 1 | ||
| h5file$close_all() | ||
|
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| expect_error(read_h5(file), regexp = "Object class not found") | ||
| }) | ||
| expect_error(read_h5(file), regexp = "Object class not found") | ||
| }) | ||
|
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||
| } |