Functions documentation and vignettes are available here.
Please note that function names changed in Version 0.2.44. If you are using flashier code from previous versions, please make the following substitutions, and note that many parameter names have changed as well:
| Old Name | New Name |
|---|---|
| as.ebnm.fn | flash_ebnm |
| conv.crit.elbo | flash_conv_crit_elbo_diff |
| conv.crit.factors | flash_conv_crit_max_chg_F |
| conv.crit.loadings | flash_conv_crit_max_chg_L |
| display.elbo | flash_verbose_elbo |
| display.elbo.diff | flash_verbose_elbo_diff |
| display.F.max.chg | flash_verbose_max_chg_F |
| display.L.max.chg | flash_verbose_max_chg_L |
| display.max.chg | flash_verbose_max_chg |
| ff.elbo | flash_fit_get_elbo |
| ff.est.tau | flash_fit_get_est_tau |
| ff.fixed.tau | flash_fit_get_fixed_tau |
| ff.g | flash_fit_get_g |
| ff.KL | flash_fit_get_KL |
| ff.p2m | flash_fit_get_p2m |
| ff.pm | flash_fit_get_pm |
| ff.tau | flash_fit_get_tau |
| flash.add.greedy | flash_greedy |
| flash.backfit | flash_backfit |
| flash.fit | flash_fit |
| flash.fix.factors | flash_factors_fix |
| flash.init | flash_init |
| flash.init.factors | flash_factors_init |
| flash.nullcheck | flash_nullcheck |
| flash.remove.factors | flash_factors_remove |
| flash.reorder.factors | flash_factors_reorder |
| flash.set.factors.to.zero | flash_factors_set_to_zero |
| flash.set.verbose | flash_set_verbose |
| init.fn.default | flash_greedy_init_default |
| init.fn.irlba | flash_greedy_init_irlba |
| init.fn.softImpute | flash_greedy_init_softImpute |