version 0.1-2

ChangeLog

@@ -134,5 +134,53 @@ processing col and pch arguments
 
 2013-09-06  Andreas Papritz  <papritz@env.ethz.ch>
 
-* georob.exported.functions.R (georob, georob.control, bbsolve.control): code for solving estimating equations by BBsolve{BB} commented out (released to CRAN as version 0.1-2)
-* georob.private.functions.R (compute.estimating.equations, compute.expanded.estimating.equations, estimating.eqations.xihat, estimate.xihat, georob.fit, gradient.negative.restricted.loglikelihood, negative.restr.loglikelihood, prepare.likelihood.calculations): code for solving estimating equations by BBsolve{BB} commented out (released to CRAN as version 0.1-2)
+* georob.exported.functions.R (georob, georob.control, bbsolve.control): code for solving estimating equations by BBsolve{BB} commented out (released to CRAN as version 0.1-1)
+* georob.private.functions.R (compute.estimating.equations, compute.expanded.estimating.equations, estimating.eqations.xihat, estimate.xihat, georob.fit, gradient.negative.restricted.loglikelihood, negative.restr.loglikelihood, prepare.likelihood.calculations): code for solving estimating equations by BBsolve{BB} commented out (released to CRAN as version 0.1-1)
+
+
+2014-01-23  Andreas Papritz  <papritz@env.ethz.ch>
+
+* georob.private.functions.R (prepare.likelihood.calculations): correct comparison of trial parameter values with safe.param
+
+
+2014-02-06  Andreas Papritz  <papritz@env.ethz.ch>
+
+* georob.exported.functions (georob): correcting error that occurred for rank-deficient design matrices
+* georob.private.functions.R (gerorob.fit): correcting error that occurred for rank-deficient design matrices
+
+
+2014-02-11  Andreas Papritz  <papritz@env.ethz.ch>
+
+* georob.predict.R (predict.georob): suppressing warnings caused by use of version 2 function of package RandomFields
+* georob.private.functions.R (gcr, compute.semivariance): suppressing warnings caused by use of version 2 function of package RandomFields
+
+
+2014-02-19  Andreas Papritz  <papritz@env.ethz.ch>
+
+* georob.exported.functions (georob): changes for now exported function robMD{robustbase}, correcting error when model contains offset
+* georob.private.functions.R (gerorob.fit): correcting error when model contains offset
+* georob.predict.R (predict.georob): correcting error when model contains offset
+* georob.S3methods.R (waldtest.georob): handling verbose output when re-fitting model
+
+
+2014-02-21  Andreas Papritz  <papritz@env.ethz.ch>
+
+* georob.cv.R (cv.georob): changes for dealing with problem when factor are very unbalanced
+
+
+2014-02-27  Andreas Papritz  <papritz@env.ethz.ch>
+
+* georob.S3methods.R (deviance.georob): computing 'pseudo' deviance for robustly fitted models
+
+
+2014-03-01  Andreas Papritz  <papritz@env.ethz.ch>
+
+* georob.S3methods.R (add1.georob, drop1.georob, extractAIC.georob, step, step.default, step.georob): functions for stepwise selection of fixed-effects terms
+
+
+2014-03-05  Andreas Papritz  <papritz@env.ethz.ch>
+
+* georob.private.functions.R (compute.semivariance, gar): changes for RandomFields version 3
+* georob.predict.R (predict.georobcd R.	): changes for RandomFields version 3
+
+

DESCRIPTION

@@ -1,15 +1,15 @@
 Package: georob
 Type: Package
 Title: Robust Geostatistical Analysis of Spatial Data
-Version: 0.1-1
+Version: 0.1-2
 Date: 2013-09-06
 Authors@R: c(
   person( "Andreas", "Papritz", role = c( "cre", "aut" ), 
           email =  "andreas.papritz@env.ethz.ch" ),
   person( "Cornelia", "Schwierz", role = "ctb" ))
 Depends: R(>= 2.14.0), sp(>= 0.9-60)
 Imports: constrainedKriging(>= 0.2-1), lmtest, nlme, nleqslv, quantreg,
-        RandomFields(>= 2.0.55), robustbase(>= 0.9-5)
+        RandomFields(>= 3.0.10), robustbase(>= 0.90-2)
 Suggests: geoR
 Description: The georob package provides functions for fitting linear models 
          with spatially correlated errors by robust and Gaussian Restricted 
@@ -18,10 +18,10 @@ Description: The georob package provides functions for fitting linear models
          cross-validation and for unbiased back-transformation of kriging 
          predictions of log-transformed data.
 License: GPL (>= 2)
-Packaged: 2013-09-06 16:02:31 UTC; papritz
+Packaged: 2014-03-05 13:11:49 UTC; papritz
 Author: Andreas Papritz [cre, aut],
   Cornelia Schwierz [ctb]
 Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
 NeedsCompilation: no
 Repository: CRAN
-Date/Publication: 2013-09-06 22:26:35
+Date/Publication: 2014-03-05 16:41:49

MD5

@@ -1,26 +1,27 @@
-a1d48d5591dbcb607a7662c100d85157 *ChangeLog
-9b7bd2ef508e297284032709fbf50af2 *DESCRIPTION
-ef6e150c23e65c4cff172d666d412029 *NAMESPACE
-e954ddad8b251b4e602e671f2143ce5a *NEWS
-f1caeb8efe2c5c9b1cc9cbc1cbf9953a *R/georob.S3methods.R
-8b4950fe9221f1cfc98880ae0e830c22 *R/georob.cv.R
-78aa8f1e637bd010f9095d9c789ec1fa *R/georob.exported.functions.R
+9bcd392930a046c55916f3c75b174f53 *ChangeLog
+c770a4532c623c9e476292e195a7b853 *DESCRIPTION
+a1ad734aaae6f7f8c2edec0590bb29f6 *NAMESPACE
+3a15a70dc5c4822b32c4e660394c0c98 *NEWS
+c58eb2d3c7cba32c720b1d9257fa29c9 *R/georob.S3methods.R
+f7f8b2d84a4b37a1268322dd4c7a83d6 *R/georob.cv.R
+1913920738e2271563dde7a08832d21a *R/georob.exported.functions.R
 2de0430016d74d0f5cd9e05d930ac524 *R/georob.lgnpp.R
-f463cb2f22089f5b9ce57bc72cf869bf *R/georob.predict.R
-7443311ae7361d4d425dec5fb4a2d6a5 *R/georob.private.functions.R
+05e76687ede930f3fb1f412427f30978 *R/georob.predict.R
+a73679e3e73edc9bf9d8c2f9cdce54a9 *R/georob.private.functions.R
 eaeffd2851882472d9d93155ce7d010e *R/variogram.R
 37024b25066668e93df4dcbd5e12e036 *demo/00Index
 92abfbadc878aeeeaefa8721f341fe8c *demo/georob_example.R
-e4554b84fbc6a2362bf31b1fc46ca36d *man/S3methods.georob.Rd
+20c51be7464bc83ffcdf2bc55971a0ad *man/S3methods.georob.Rd
 88c3f25bd944066ba6bc8acc62f83a23 *man/compress.Rd
 c317de9d9b66e9222c125e5ae382425a *man/cv.Rd
-e9646cc711d06c40a6f7aa8eb8d6a403 *man/cv.georob.Rd
+e2e2b0f6907928407faa9053b2807994 *man/cv.georob.Rd
 807b4fe7b884b93b8f83ff95e1396597 *man/fit.variogram.model.Rd
-1bb0d0e32b9686103ea49308bf61e3c6 *man/georob-package.Rd
-dbb77953b159d41211a4d0ef6a0cfdd2 *man/georob.Rd
-b4f48a8dbf23c67b7ed32090377337af *man/georob.control.Rd
-d96b0ecdd0867969842fe24e058492bd *man/georobObject.Rd
-d6fec855e33e7a4b8b749dfddd99699d *man/internal.functions.Rd
+99523a774724b63f997131898234a3a7 *man/georob-package.Rd
+083cea92123351d717c6ba6e99544c87 *man/georob.Rd
+2c482f91fbc6dc98b3a83dc66104991e *man/georob.control.Rd
+d12640f096fc0aa8bb1e75795a81e02b *man/georobModelBuilding.Rd
+46899f02770c1ac72dc5be5690a49e77 *man/georobObject.Rd
+e58b6961c809a73e58a3d18f6abcb4b2 *man/internal.functions.Rd
 cbd37be9746cd88259e5d6bfbf4b94a4 *man/lgnpp.Rd
 eb51a566de8d3ba54e945b58261d7094 *man/param.names.Rd
 dfa6007c27b8206e6ebbdeec49935f08 *man/plot.georob.Rd

NAMESPACE

@@ -6,8 +6,8 @@ importFrom( lmtest, waldtest, waldtest.default )
 importFrom( nlme, fixef, fixed.effects, ranef, random.effects )
 importFrom( nleqslv, nleqslv )
 importFrom( quantreg, rq.fit )
-importFrom( RandomFields, Variogram )
-importFrom( robustbase, lmrob.control, lmrob.fit, Qn, summarizeRobWeights )
+importFrom( RandomFields, RFvariogram, RFoldstyle, RFoptions)
+importFrom( robustbase, lmrob.control, lmrob.fit, Qn, robMD, summarizeRobWeights )
 
 # exported functions
 
@@ -35,13 +35,17 @@ export(
   ranef,                            # ok export of generic ranef{nlme}
   rq.control,                       # ok
   sample.variogram,                 # ok
+  step,                             # ok
   validate.predictions,             # ok
   waldtest                          # ok export of generic waldtest{lmtest}
 )
 
 # documented but unexported functions
 #
+#   add1.georob,                    # ok
 #   deviance.georob,                # ok
+#   drop1.georob,                   # ok
+#   exportAIC.georob,               # ok
 #   fixed.effects.georob,           # ok
 #   fixef.georob,                   # ok
 #   lines.fitted.variogram,         # ok
@@ -68,6 +72,8 @@ export(
 #   rstandard.georob,               # ok
 #   rstudent.georob,                # ok
 #   rstudent.cv.georob,             # ok
+#   step.default,                   # ok
+#   step.georob,                    # ok
 #   summary.fitted.variogram,       # ok
 #   summary.georob,                 # ok
 #   summary.sample.variogram,       # ok
@@ -94,9 +100,13 @@ export(
 ##   gradient.negative.restricted.loglikelihood,
 ##   negative.restr.loglikelihood,
 ##   prepare.likelihood.calculations,
+##   safe_pchisq,
 ##   update.xihat
 
+S3method( add1, georob  )
 S3method( deviance, georob  )
+S3method( drop1, georob  )
+S3method( extractAIC, georob  )
 S3method( fixed.effects, georob  )
 S3method( fixef, georob  )
 S3method( lines, fitted.variogram )
@@ -123,12 +133,15 @@ S3method( resid, georob )
 S3method( residuals, georob )
 S3method( rstandard, georob )
 S3method( rstudent, georob )
+S3method( step, default )
+S3method( step, georob )
 S3method( summary, fitted.variogram )
 S3method( summary, georob )
 S3method( summary, sample.variogram )
 S3method( summary, cv.georob )
 S3method( vcov, georob )
 S3method( waldtest, georob )
+# S3method( cv, default )
 S3method( cv, georob )
 # S3method( cv, likGRF )
 # S3method( cv, variomodel )

NEWS

@@ -1 +1,3 @@
 2012-12-14  georob Version 0.1-0 released!
+2013-09-06  georob Version 0.1-1 released to CRAN
+