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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| Package: hdf5r.Extra | ||
| Type: Package | ||
| Title: Extensions for 'HDF5' R Interfaces | ||
| Version: 0.0.1 | ||
| Date: 2023-08-26 | ||
| Authors@R: person(given = "Yuchen", family = "Li", email = "ycli1995@outlook.com", role = c("aut", "cre")) | ||
| Description: Some methods to manipulate 'HDF5' files, extending the 'hdf5r' package. Reading and writing R objects to 'HDF5' formats follow the specification of 'AnnData' <https://anndata.readthedocs.io/en/latest/fileformat-prose.html>. | ||
| Depends: R (>= 4.1.0), hdf5r (>= 1.3.8), methods, utils | ||
| Imports: checkmate, dplyr, easy.utils, Matrix, MatrixExtra, rlang | ||
| License: MIT + file LICENSE | ||
| RoxygenNote: 7.2.3 | ||
| Encoding: UTF-8 | ||
| URL: https://github.com/ycli1995/hdf5r.Extra | ||
| BugReports: https://github.com/ycli1995/hdf5r.Extra/issues | ||
| NeedsCompilation: no | ||
| Packaged: 2023-09-14 09:18:26 UTC; mydocker | ||
| Author: Yuchen Li [aut, cre] | ||
| Maintainer: Yuchen Li <ycli1995@outlook.com> | ||
| Repository: CRAN | ||
| Date/Publication: 2023-09-14 10:30:02 UTC |
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|---|---|---|
| @@ -0,0 +1,2 @@ | ||
| YEAR: 2023 | ||
| COPYRIGHT HOLDER: hdf5r.Extra authors |
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|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| ce47ead77e00266b0a4c3b7dc0ec32a5 *DESCRIPTION | ||
| 1285b0f228eef791319304295b0184fc *LICENSE | ||
| 46afd66ee3b76c30a741a802b42432f8 *NAMESPACE | ||
| 5350e6ab1434ccd0a70dfa1562af2f8b *R/AllGenerics.R | ||
| 89e0ce6c6ae8b3f0af00ac991bf34ac2 *R/hdf5-functions.R | ||
| 7fc98eaecdc8713cc5a2fae956b039de *R/hdf5-internal.R | ||
| 9991fab2218486a7e8ec05f3c04e7f3d *R/hdf5-methods.R | ||
| c79087585c3cb97e93603e4637db4e6d *R/zzz.R | ||
| d3f437597544eedce65892287c06d94b *README.md | ||
| e28ff15653d6ad6c23682246a76fcd04 *inst/extdata/pbmc_small.h5ad | ||
| 20e3b4bc3211aa7cc503fbeed7950838 *man/H5-attributs.Rd | ||
| 985e039e065d3faf37a9e4f3210930d2 *man/H5-dataset-info.Rd | ||
| be8266f09349e8e3a2a843a179b4e213 *man/h5AbsLinkName.Rd | ||
| bc6611114f9e10cfa812ba9dfcb027f4 *man/h5Backup.Rd | ||
| 4002d9bfe316fb247f5249b556b6fc22 *man/h5Class.Rd | ||
| 46fb67b1feee1894ac3da8115667904d *man/h5Copy.Rd | ||
| c07b22d0471d1a8c77d49c75eb9c4518 *man/h5CreateDataset.Rd | ||
| 725dec61c3df854ba353f79f12116060 *man/h5CreateFile.Rd | ||
| b633edf99a57afe4ba05d9d70151e28f *man/h5CreateGroup.Rd | ||
| 44349caa9fe867e921b40b4cbe91d618 *man/h5Delete.Rd | ||
| 9f343c85c74d3a36e2a4f137b0ef69ca *man/h5Exists.Rd | ||
| 75cf2e18c63cdb17dad705b2bc408ed4 *man/h5GuessDtype.Rd | ||
| 088aa02bbd768597cdc645cb85ad17eb *man/h5List.Rd | ||
| 98510bee84829bec494c93b0dee6cb9b *man/h5Move.Rd | ||
| eff9fb2f327337777c3c4b524ea43e08 *man/h5Open.Rd | ||
| d43a4069a214e44352f0d002d2285e50 *man/h5Overwrite.Rd | ||
| 4d76f73f11d9b95609dddac3717dbd7e *man/h5Prep.Rd | ||
| 73c480de6c10480475c89ec27c4b988a *man/h5Read.Rd | ||
| c0052eb84def831ed64408f2c40576a7 *man/h5ReadDataset.Rd | ||
| d2848f3d446825488b961dce40b9949c *man/h5TryOpen.Rd | ||
| 23d1d84660aea5b80a04f30d5c6147c0 *man/h5Write.Rd | ||
| 1419759fd274e9be57aa345e1c3b72bd *man/h5WriteDataset.Rd | ||
| 704982405edc6461bc1a605032687f9b *man/h5WriteScalar.Rd | ||
| e50f5ae9809f6a5c39220c16f94913ad *man/hdf5r.Extra-package.Rd |
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| # Generated by roxygen2: do not edit by hand | ||
|
|
||
| S3method(h5Attr,H5D) | ||
| S3method(h5Attr,H5File) | ||
| S3method(h5Attr,H5Group) | ||
| S3method(h5Attr,character) | ||
| S3method(h5AttrNames,H5D) | ||
| S3method(h5AttrNames,H5File) | ||
| S3method(h5AttrNames,H5Group) | ||
| S3method(h5AttrNames,character) | ||
| S3method(h5Attributes,H5D) | ||
| S3method(h5Attributes,H5File) | ||
| S3method(h5Attributes,H5Group) | ||
| S3method(h5Attributes,character) | ||
| S3method(h5CreateDataset,H5File) | ||
| S3method(h5CreateDataset,H5Group) | ||
| S3method(h5CreateDataset,character) | ||
| S3method(h5CreateFile,character) | ||
| S3method(h5CreateGroup,H5File) | ||
| S3method(h5CreateGroup,H5Group) | ||
| S3method(h5CreateGroup,character) | ||
| S3method(h5Delete,H5File) | ||
| S3method(h5Delete,H5Group) | ||
| S3method(h5Delete,character) | ||
| S3method(h5DeleteAttr,H5D) | ||
| S3method(h5DeleteAttr,H5File) | ||
| S3method(h5DeleteAttr,H5Group) | ||
| S3method(h5DeleteAttr,character) | ||
| S3method(h5Dims,H5D) | ||
| S3method(h5Dims,H5File) | ||
| S3method(h5Dims,H5Group) | ||
| S3method(h5Dims,character) | ||
| S3method(h5Exists,H5File) | ||
| S3method(h5Exists,H5Group) | ||
| S3method(h5Exists,character) | ||
| S3method(h5List,H5File) | ||
| S3method(h5List,H5Group) | ||
| S3method(h5List,character) | ||
| S3method(h5MaxDims,H5D) | ||
| S3method(h5MaxDims,H5File) | ||
| S3method(h5MaxDims,H5Group) | ||
| S3method(h5MaxDims,character) | ||
| S3method(h5Open,H5File) | ||
| S3method(h5Open,H5Group) | ||
| S3method(h5Open,character) | ||
| S3method(h5Prep,default) | ||
| S3method(h5Read,H5File) | ||
| S3method(h5Read,H5Group) | ||
| S3method(h5Read,character) | ||
| S3method(h5ReadDataset,H5D) | ||
| S3method(h5ReadDataset,H5File) | ||
| S3method(h5ReadDataset,H5Group) | ||
| S3method(h5ReadDataset,character) | ||
| S3method(h5Write,array) | ||
| S3method(h5Write,data.frame) | ||
| S3method(h5Write,default) | ||
| S3method(h5Write,dgCMatrix) | ||
| S3method(h5Write,dgRMatrix) | ||
| S3method(h5Write,factor) | ||
| S3method(h5Write,list) | ||
| S3method(h5WriteAttr,H5D) | ||
| S3method(h5WriteAttr,H5File) | ||
| S3method(h5WriteAttr,H5Group) | ||
| S3method(h5WriteAttr,character) | ||
| S3method(h5WriteDataset,H5D) | ||
| S3method(h5WriteDataset,H5File) | ||
| S3method(h5WriteDataset,H5Group) | ||
| S3method(h5WriteDataset,character) | ||
| S3method(h5WriteScalar,H5File) | ||
| S3method(h5WriteScalar,H5Group) | ||
| S3method(h5WriteScalar,character) | ||
| export(h5AbsLinkName) | ||
| export(h5Attr) | ||
| export(h5AttrNames) | ||
| export(h5Attributes) | ||
| export(h5Backup) | ||
| export(h5Class) | ||
| export(h5Copy) | ||
| export(h5CreateDataset) | ||
| export(h5CreateFile) | ||
| export(h5CreateGroup) | ||
| export(h5Delete) | ||
| export(h5DeleteAttr) | ||
| export(h5Dims) | ||
| export(h5Exists) | ||
| export(h5GuessDtype) | ||
| export(h5List) | ||
| export(h5MaxDims) | ||
| export(h5Move) | ||
| export(h5Open) | ||
| export(h5Overwrite) | ||
| export(h5Prep) | ||
| export(h5Read) | ||
| export(h5ReadDataset) | ||
| export(h5TryOpen) | ||
| export(h5Write) | ||
| export(h5WriteAttr) | ||
| export(h5WriteDataset) | ||
| export(h5WriteScalar) | ||
| export(is.H5D) | ||
| export(is.H5Group) | ||
| importClassesFrom(Matrix,dgRMatrix) | ||
| importFrom(Matrix,sparseMatrix) | ||
| importFrom(MatrixExtra,t_shallow) | ||
| importFrom(checkmate,assert_scalar) | ||
| importFrom(dplyr,`%>%`) | ||
| importFrom(easy.utils,chunkPoints) | ||
| importFrom(easy.utils,isValidCharacters) | ||
| importFrom(hdf5r,H5D) | ||
| importFrom(hdf5r,H5File) | ||
| importFrom(hdf5r,H5Group) | ||
| importFrom(hdf5r,H5P_DATASET_CREATE) | ||
| importFrom(hdf5r,H5S) | ||
| importFrom(hdf5r,H5T_STRING) | ||
| importFrom(hdf5r,guess_chunks) | ||
| importFrom(hdf5r,guess_dtype) | ||
| importFrom(hdf5r,h5attr_names) | ||
| importFrom(hdf5r,h5const) | ||
| importFrom(hdf5r,h5garbage_collect) | ||
| importFrom(methods,is) | ||
| importFrom(methods,slot) | ||
| importFrom(rlang,.data) | ||
| importFrom(rlang,`%||%`) | ||
| importFrom(rlang,is_atomic) | ||
| importFrom(rlang,is_empty) | ||
| importFrom(rlang,is_scalar_atomic) | ||
| importFrom(stats,setNames) | ||
| importFrom(tools,file_path_as_absolute) | ||
| importFrom(utils,globalVariables) | ||
| importMethodsFrom(Matrix,t) |
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