version 1.17.0

ChangeLog

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+2008-04-28  Martin Maechler  <maechler@stat.math.ethz.ch>
+
+	* DESCRIPTION (Version): 1.13.4
+
+	* man/*.Rd: fixes to several man pages;
+	note that gplot.hexbin() now is *deprecated* !
+
+2008-03-18  Patrick Aboyoun  <paboyoun@fhcrc.org>
+
+	* man/panel.hexboxplot, man/panel.hexgrid, man/panel.hexloess: Added more information to man files.
+	* R/hexbinplot.R (panel.hexboxplot): removed unused singles argument.
+
+2008-03-12  Patrick Aboyoun  <paboyoun@fhcrc.org>
+
+	* R/hexViewport.R (hexVP.abline): Fixed the handling of non-model objects as input.
+
+2008-02-28  Patrick Aboyoun  <paboyoun@fhcrc.org>
+
+	* R/hexPlotMA.R (plotMAhex): Require users to specify status explicitly
+	rather than as the component MA$genes$Status
+	* R/hexPlotMA.R (plotMAhex): Replaced support of Biobase class exprSet with
+	ExpressionSet
+
+2006-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
+
+	* NAMESPACE: add full list of colorspace dependencies
+
+2005-07-26  Martin Maechler  <maechler@stat.math.ethz.ch>
+
+	* R/hexViewport.R (smartBnds): some rationalization
+	* R/hexViewport.R (rname): dito
+
+2005-07-19  Martin Maechler  <maechler@stat.math.ethz.ch>
+
+	* DESCRIPTION (Version): 1.3.1 (not to confuse with the previous one).
+
+	* man/gplot.hexbin.Rd: fix typo and usage for S4method
+
+	* R/hexPlotMA.R (hexMA.loess): add argument 'n'
+
+	* R/hexViewport.R (hexVP.loess): add argument 'n'; other "white
+	space cosmetic" in file
+
+2005-10-21 Nicholas Lewin-Koh <nikko@hailmail.net>
+
+	* added Deepayan Sarkar's hexbinplot.R function for lattice hexbin
+	plots
+
+	* Added my Hexplom function based on Deepayan's code
+
+2005-10-27 Nicholas Lewin-Koh <nikko@hailmail.net>
+
+	* Added more panel functions, for hexboxplots and hdiffplots.
+

DESCRIPTION

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+Package: hexbin
+Version: 1.17.0
+Date: 2008-05-21
+Title: Hexagonal Binning Routines
+Author: Dan Carr <dcarr@voxel.galaxy.gmu.edu>, ported by Nicholas
+        Lewin-Koh and Martin Maechler <maechler@stat.math.ethz.ch>
+Maintainer: Nicholas Lewin-Koh <nikko@hailmail.net>
+Depends: R (>= 2.0.1), methods, stats, grid, lattice
+Suggests: marray, cluster, affy, Biobase
+Description: Binning and plotting functions for hexagonal bins. Now
+        uses and relies on grid graphics and formal (S4) classes and
+        methods.
+Collate: BTC.R BTY.R grid.hexagons.R grid.hexlegend.R hbox.R hdiffplot.R hexbinList.R hexbinplot.R hexbin.s4.R hexpanel.R hexplom.R hexPlotMA.R hexutil.R hexViewport.R HO.R LINGRAY.R LOCS.R MAG.R RB.R smoothHexbin.R
+License: GPL 2
+Packaged: Tue Dec  2 22:38:34 2008; nikko

NAMESPACE

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+useDynLib(hexbin)
+
+import(grid)    ## too many things from grid
+import(lattice) ## too many things from lattice
+importFrom("graphics", plot)
+#importFrom(colorspace, "HSV", "LUV", "coords", "hex")
+
+## Generics and functions defined in this package
+export(
+       "erode",
+       "erode.hexbin",
+       "getHMedian",
+## document those; the method aliases are there:
+##       "getFig", "getMargins", "getPlt", "getXscale", "getYscale",
+       "gplot.hexbin",
+       "grid.hexagons",
+       "grid.hexlegend",
+       "hboxplot",
+       "hcell2xy",
+       "hexbin",
+       "hexcoords",
+       "hexList",
+       "hexpolygon",
+       "hexViewport",
+       "hexVP.abline",
+       "plotMAhex",
+       "hexVP.loess",
+       "hexMA.loess",
+       "hsmooth",
+       "list2hexList",
+       "pushHexport",
+       "smooth.hexbin",
+       "hdiffplot", # but not all the helpers in ./R/hdiffplot.R
+       ## Stuff in hexutils
+       "hcell2xyInt",
+       "hgridcent",
+       "hexGraphPaper",
+       "hexTapply",
+       "optShape",
+       "inout.hex",
+       ## color stuff
+       "BTC", "BTY", "LinGray", "LinOCS", "heat.ob", "magent","plinrain",
+
+       ## Lattice stuff:
+
+       ## high-level functions
+       "hexbinplot", "hexplom", 
+
+       ## panel functions
+       "panel.hexbinplot", "panel.hexplom", "panel.hexboxplot",
+       "panel.hexgrid","panel.hexloess",
+
+       ## utilities
+       "hexlegendGrob")
+
+
+## S3 methods for lattice-type functions
+
+S3method("hexbinplot", "formula")
+S3method("hexplom",    "formula")
+S3method("hexplom",    "matrix")
+S3method("hexplom",    "data.frame")
+
+
+
+exportClasses("hexbin",
+              "erodebin",
+              "smoothbin",
+              "hexVP",
+              # could/should we keep this 'private' (?) :
+              "integer or NULL",
+              "hexbinList"
+              )
+
+exportMethods(
+              "erode",
+## undocumented: "getFig", "getMargins", "getPlt", "getXscale", "getYscale",
+              "hsmooth",
+
+              "plot",
+              "summary",
+              "show",
+              "coerce"
+              )
+
+