version 1.0-319

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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,21 +1,17 @@
 Package: hisemi
 Type: Package
 Title: Hierarchical Semiparametric Regression of Test Statistics
-Version: 1.0-249
-Date: 2012-08-01
-Author: Long Qu
-Maintainer: Long Qu <longorognol@hotmail.com>
+Version: 1.0-319
+Date: 2013-08-30
+Author: Long Qu 
+Maintainer: Long Qu <long.qu@wright.edu>
 Depends: R (>= 2.12)
 Imports: Matrix , Iso(>= 0.0-5), splines, fda
 Suggests: multtest, qvalue, pi0
 Enhances: stats, graphics
-Description: This package implements methods for hierarchical
-        semiparametric regression models for test statistics.
-        Specifically, test statistics given the null/alternative
-        hypotheses are modeled parametrically, whereas the unobservable
-        status of null/alternative hypotheses are modeled using
-        nonparametric additive logistic regression over covariates.
+Description: This package implements methods for hierarchical semiparametric regression models for test statistics. Specifically, test statistics given the null/alternative hypotheses are modeled parametrically, whereas the unobservable status of null/alternative hypotheses are modeled using nonparametric additive logistic regression over covariates. 
 License: GPL (>= 2)
-Packaged: 2012-08-01 13:28:41 UTC; longor
+Packaged: 2013-08-30 21:06:27 UTC; Longor
+NeedsCompilation: no
 Repository: CRAN
-Date/Publication: 2012-08-01 14:05:30
+Date/Publication: 2013-08-31 14:46:21
diff --git a/MD5 b/MD5
@@ -1,4 +1,4 @@
-55e2e919599cabbfc48aba6dd10152a8 *DESCRIPTION
+1ee79f55b395375add1f5d3cec6d5267 *DESCRIPTION
 b1187d229f05a1255b55f097935a4315 *NAMESPACE
 665f70dec799416ce05115f62419ca65 *R/EM.Newton.R
 2c5f3b7504cec7c334c55b761b28ab9c *R/EM.Newton.support.R
@@ -10,25 +10,25 @@ d4594409d99096ca9efe3cdc67be6ea5 *R/directSum.R
 c4fe3af705aeade917a450c731f61c58 *R/n.knots.R
 de4722ae0f0f58b1ec9aef9b22aa92a1 *R/scaledTMix.R
 e3d96549dcf56c1089776081515235ed *R/tPoly.newton.R
-ac6b0ab98c8cce0798196358f0d9b40c *man/EMupdate.Rd
-ecc5d0b047c1f75526507f18b825bd9f *man/NRupdate.Rd
-2e86f51a586e45d10d9a5032425f71de *man/OsplinePen.Rd
-d74465ddfc90a3c940be105a55581fba *man/coef.hisemit.Rd
-e685e09423b156d63d38d9efcc118b0b *man/confint.hisemit.Rd
-d07e2027775c34281faa633f19dd846b *man/directSum.Rd
-477c35a63fe3f47e44c6b6e1fb6a6d45 *man/fitted.hisemit.Rd
+8bfc412d5450bb12b56d410ec60a40b5 *man/EMupdate.Rd
+98f28ee3fbe20e5481766f24279acd00 *man/NRupdate.Rd
+fab4c1f06335cb846db213f95b210f4f *man/OsplinePen.Rd
+32927eeaf0ef42368036057f1bce4ca6 *man/coef.hisemit.Rd
+0d3e033c4a3bce199562384ca931d6cb *man/confint.hisemit.Rd
+333a02371ca3b1bd2ed126078df155c1 *man/directSum.Rd
+192da12444fa0125a2389e170a8570ab *man/fitted.hisemit.Rd
 8196fb9769464b86522e2207a4f80b48 *man/hisemi-internal.Rd
-a46aee1b53dfc285fe104efbf3be608f *man/hisemi-package.Rd
-bf24b35305affa8d77756d29151251f0 *man/logLik.hisemit.Rd
-97ee43763742b9d9c5bdc398c79b1542 *man/logistic.enp.Rd
-2373db5649de8683a33a86d70eb66d75 *man/logit.Rd
-cd15b16576e66ad2f6896ea37f680c8a *man/n.knots.Rd
-36955a210f8db84276b3dd68348b813b *man/penLik.EMNewton.Rd
-ca35d94477cf06aa1941191ae81dce86 *man/plot.hisemit.Rd
-0b8dbe7d55c851ac767c7d368bc91271 *man/print.hisemit.Rd
-21f0fe0d1a2b889eaede82de91091e11 *man/resid.hisemit.Rd
-5584d019d6f73808e5492f33baee59e3 *man/scaledTMix.null.Rd
-ddec67a0c247496873beefd09089520d *man/scaledTMix.psat.Rd
-9a63425c2b3819cb10389a2dd26e687d *man/scaledTMix.sat.Rd
-28973bb3209d55047cd2df4b5a42b247 *man/tPoly.newton.Rd
-2e85b3a3839512e48df27c8f5b274785 *man/vcov.hisemit.Rd
+24b2ae60e168cca48b1d13ede234068f *man/hisemi-package.Rd
+bb1962251de1f02c5ffeb687dee9481e *man/logLik.hisemit.Rd
+1564eae6216725cce3b887b1aa993ec9 *man/logistic.enp.Rd
+aabd0dd8bc96edb8801ae14dbdd47ba5 *man/logit.Rd
+3e5fcc695b1e69ee7ef7c8a4f2558e41 *man/n.knots.Rd
+0505d27a05f2a557b58b557a2ca61365 *man/penLik.EMNewton.Rd
+1f90bdaf8296e2c46165929a3f79beba *man/plot.hisemit.Rd
+89cb83934afc83a70e1e1529fdefc839 *man/print.hisemit.Rd
+c29314fd1a9ab303e370b037aba90d1e *man/resid.hisemit.Rd
+a2243802abe16e3ce7d08f24b024ddd2 *man/scaledTMix.null.Rd
+bad5c34a0f9b7bdd945a7e04da90470c *man/scaledTMix.psat.Rd
+c95205ea391d7292676e1e8e02eb4487 *man/scaledTMix.sat.Rd
+565fd88a4646ce7874d5569c7feb3b13 *man/tPoly.newton.Rd
+d65cbdd80f8fc794dc4d12c52cc564c5 *man/vcov.hisemit.Rd
diff --git a/man/EMupdate.Rd b/man/EMupdate.Rd
@@ -33,8 +33,8 @@ EMupdate(starts, nLogLik.pen, optim.method, H, tstat, df, dt0,
 \value{
 A numeric vector of updated parameter estimates. The scale factor is in the \code{log(scale.fact-1)} parameterization. 
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{penLik.EMNewton}}, \code{\link{NRupdate}} }

diff --git a/man/NRupdate.Rd b/man/NRupdate.Rd
@@ -35,8 +35,8 @@ NRupdate(f, starts, gradient, hessian, ..., ridge0 = 1e-06,
     \item{\code{'iter'}}{ The number of iterations}
     \item{\code{'hessian'}}{ The final Hessian matrix, only available if \code{return.hessian=TRUE}. }
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{penLik.EMNewton}}, \code{\link{EMupdate}} }

diff --git a/man/OsplinePen.Rd b/man/OsplinePen.Rd
@@ -24,7 +24,7 @@ OsplinePen(Boundary.knots, knots, ord=1)
 \references{
 Wand, M. P. and Ormerod, J. T. (2008) On semiparametric regression with O'Sullivan penalized splines. Aust. N. Z. J. Stat. 50(2), 179--198.
 }
-\author{ Long Qu [\email{longorognol@hotmail.com}] }
+\author{ Long Qu [\email{long.qu@wright.edu}] }
 \note{
 When knots are selected by all distinct x values, this returns the penalty matrix of smoothing splines. 
 

diff --git a/man/coef.hisemit.Rd b/man/coef.hisemit.Rd
@@ -26,8 +26,8 @@
 \value{
         A numeric vector of estimated parameters
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)  }
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177  }
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, \code{\link{vcov.hisemit}}, \code{\link{residuals.hisemit}}, \code{\link{logLik.hisemit}}, \code{\link{confint.hisemit}}, \code{\link{print.hisemit}},

diff --git a/man/confint.hisemit.Rd b/man/confint.hisemit.Rd
@@ -38,8 +38,8 @@ Extract Wald-type asymptotic confidence intervals from a \code{hisemit} object.
 \value{
 A matrix (or vector) with columns giving lower and upper confidence limits for each parameter. 
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, \code{\link{vcov.hisemit}}, \code{\link{residuals.hisemit}}, \code{\link{logLik.hisemit}}, \code{\link{confint.hisemit}}, \code{\link{print.hisemit}},

diff --git a/man/directSum.Rd b/man/directSum.Rd
@@ -21,7 +21,7 @@ The function treats each matrix as an element and put the element along the diag
 }
 %\references{ 
 %}
-\author{ Long Qu \email{longorognol@hotmail.com}
+\author{ Long Qu \email{long.qu@wright.edu}
 }
 %\note{ 
 %}

diff --git a/man/fitted.hisemit.Rd b/man/fitted.hisemit.Rd
@@ -35,8 +35,8 @@
 \value{
         A numeric vector
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, \code{\link{vcov.hisemit}}, \code{\link{residuals.hisemit}}, \code{\link{logLik.hisemit}}, \code{\link{confint.hisemit}}, \code{\link{print.hisemit}},

diff --git a/man/hisemi-package.Rd b/man/hisemi-package.Rd
@@ -12,8 +12,8 @@ The package includes functions for fitting hierarchical semiparametric regressio
 \tabular{ll}{
 Package: \tab hisemi\cr
 Type: \tab Package\cr
-Version: \tab 1.0-249\cr
-Date: \tab 2012-08-01\cr
+Version: \tab 1.0-319\cr
+Date: \tab 2013-08-30\cr
 License: \tab GPL version 2 or newer\cr
 LazyLoad: \tab yes\cr
 }
@@ -37,11 +37,11 @@ LazyLoad: \tab yes\cr
 }
 }
 \author{
-Long Qu \email{longorognol@hotmail.com}
+Long Qu \email{long.qu@wright.edu}
 
-Maintainer: Long Qu \email{longorognol@hotmail.com}
+Maintainer: Long Qu \email{long.qu@wright.edu}
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012). A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012). A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
 \keyword{ package }
 \keyword{ models }
 \keyword{ regression }

diff --git a/man/logLik.hisemit.Rd b/man/logLik.hisemit.Rd
@@ -19,8 +19,8 @@
 \value{
         An object of class \code{'logLik'}. 
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, \code{\link{vcov.hisemit}}, \code{\link{residuals.hisemit}}, \code{\link{logLik.hisemit}}, \code{\link{confint.hisemit}}, \code{\link{print.hisemit}},

diff --git a/man/logistic.enp.Rd b/man/logistic.enp.Rd
@@ -30,7 +30,7 @@ A numeric vector of fitted effective number of parameters, with attributes
 \item{mode}{ The model of enps from a isotonic fit}
 }
 %\references{ }
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{nls}} }

diff --git a/man/logit.Rd b/man/logit.Rd
@@ -23,7 +23,7 @@ logit.inv(eta)
         A link function or its inverse. See \code{\link{make.link}}. 
 }
 %\references{ }
-\author{ Long Qu \email{longorognol@hotmail.com}}
+\author{ Long Qu \email{long.qu@wright.edu}}
 %\note{
 %}
 \seealso{\code{\link{make.link}}}

diff --git a/man/n.knots.Rd b/man/n.knots.Rd
@@ -25,10 +25,10 @@ Li, Y. and Ruppert, D. (2008). on the asymptotics of penalized splines. Biometri
 
 Ruppert, D. (2002). Selecting the number of knots for penalized splines. Journal of Computational and Graphical Statistics 11, 735--757.
 
-Qu, L., Nettleton, D., and Dekkers J. C. M. (2012) A hierarchical semiparametric model for incorporating inter-gene information for analysis of genomic data. Biometrics (to appear).
+Qu, L., Nettleton, D., and Dekkers J. C. M. (2012) A hierarchical semiparametric model for incorporating inter-gene information for analysis of genomic data. Biometrics, 68(4):1168-1177.
 
 }
-\author{ Long Qu \email{longorognol@hotmail.com}
+\author{ Long Qu \email{long.qu@wright.edu}
 }
 %\note{ 
 %}

diff --git a/man/penLik.EMNewton.Rd b/man/penLik.EMNewton.Rd
@@ -83,8 +83,8 @@ penLik.EMNewton(tstat, x, df, spar = c(10^seq(-1,8,length=30), Inf),
 \note{
 When spar is too small, the results need to be treated cautiously. It is advisable to plot the results as a check. 
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, 

diff --git a/man/plot.hisemit.Rd b/man/plot.hisemit.Rd
@@ -36,8 +36,8 @@ For histograms of residuals, an object from \code{\link{hist}} is returned.
 For scatter plot of residuals, an object from \code{\link{plot}} is returned. 
 For tuning plot, a matrix with the range of tuning criterion is returned. 
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, \code{\link{vcov.hisemit}}, \code{\link{residuals.hisemit}}, \code{\link{logLik.hisemit}}, \code{\link{confint.hisemit}}, \code{\link{print.hisemit}},

diff --git a/man/print.hisemit.Rd b/man/print.hisemit.Rd
@@ -21,8 +21,8 @@
 \value{
 The same as the results from the corresponding method for the \code{list} object. 
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, \code{\link{vcov.hisemit}}, \code{\link{residuals.hisemit}}, \code{\link{logLik.hisemit}}, \code{\link{confint.hisemit}}, \code{\link{print.hisemit}},

diff --git a/man/resid.hisemit.Rd b/man/resid.hisemit.Rd
@@ -23,9 +23,9 @@
         A numeric vector residuals. 
 }
 \references{ 
-Qu, Nettleton, Dekkers (2012) A Hierarchical Semiparametric Model for Incorporating Inter-gene Information for Analysis of Genomic Data. Biometrics (to appear)
+Qu, Nettleton, Dekkers (2012) A Hierarchical Semiparametric Model for Incorporating Inter-gene Information for Analysis of Genomic Data. Biometrics, 68(4):1168-1177
 }
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, \code{\link{vcov.hisemit}}, \code{\link{residuals.hisemit}}, \code{\link{logLik.hisemit}}, \code{\link{confint.hisemit}}, \code{\link{print.hisemit}},

diff --git a/man/scaledTMix.null.Rd b/man/scaledTMix.null.Rd
@@ -25,9 +25,9 @@ scaledTMix.null(tstat, df, starts =
   A \code{hesimit} object. 
 }
 \references{
-Qu, Nettleton, Dekkers (2012) A Hierarchical Semiparametric Model for Incorporating Inter-gene Information for Analysis of Genomic Data. Biometrics (to appear)
+Qu, Nettleton, Dekkers (2012) A Hierarchical Semiparametric Model for Incorporating Inter-gene Information for Analysis of Genomic Data. Biometrics, 68(4):1168-1177
 } 
-\author{ Long Qu \email{longorognol@hotmail.com}
+\author{ Long Qu \email{long.qu@wright.edu}
 }
 %\note{ 
 %  ~~further notes~~ 

diff --git a/man/scaledTMix.psat.Rd b/man/scaledTMix.psat.Rd
@@ -28,7 +28,7 @@ scaledTMix.psat(tstat, df, upper0 = 2)
   \item{pi0}{ A numeric vector of 0 or 1, which are the maximum likelihood estimate of \code{pi0}}
 }
 %\references{ }
-\author{ Long Qu \email{longorognol@hotmail.com}
+\author{ Long Qu \email{long.qu@wright.edu}
 }
 %\note{}
 \seealso{ \code{\link{scaledTMix.null}}, \code{\link{scaledTMix.sat}}}

diff --git a/man/scaledTMix.sat.Rd b/man/scaledTMix.sat.Rd
@@ -22,7 +22,7 @@ scaledTMix.sat(tstat, df)
   \item{logLik }{ A numeric vector of log likelihood}
 }
 %\references{ }
-\author{ Long Qu \email{longorognol@hotmail.com}
+\author{ Long Qu \email{long.qu@wright.edu}
 }
 \note{ 
 Whenever the absolute value of the \code{tstat} is less than 1, \code{pi0} will be esitmated to be 1 and the scale will also be 1. Otherwise, the \code{pi0} will be estimated to be 0 and scale will be the absolute value of \code{tstat}.

diff --git a/man/tPoly.newton.Rd b/man/tPoly.newton.Rd
@@ -80,8 +80,8 @@ tPoly.newton(tstat, x, df, starts,
         \item{penalty:}{ Penalty term}
         \item{saturated.ll:}{ Saturated log likelihood}}}
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{penLik.EMNewton}}, \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, 

diff --git a/man/vcov.hisemit.Rd b/man/vcov.hisemit.Rd
@@ -19,8 +19,8 @@
 \value{
         A numerical matrix. 
 }
-\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics (to appear)}
-\author{ Long Qu \email{longorognol@hotmail.com} }
+\references{ Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177}
+\author{ Long Qu \email{long.qu@wright.edu} }
 %\note{ 
 %}
 \seealso{ \code{\link{plot.hisemit}}, \code{\link{fitted.hisemit}}, \code{\link{coef.hisemit}}, \code{\link{vcov.hisemit}}, \code{\link{residuals.hisemit}}, \code{\link{logLik.hisemit}}, \code{\link{confint.hisemit}}, \code{\link{print.hisemit}},