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yjunechoe authored and cran-robot committed Mar 5, 2024
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6 changes: 3 additions & 3 deletions DESCRIPTION
@@ -1,6 +1,6 @@
Package: jlmerclusterperm
Title: Cluster-Based Permutation Analysis for Densely Sampled Time Data
Version: 1.1.2
Version: 1.1.3
Authors@R:
person("June", "Choe", , "jchoe001@gmail.com", role = c("aut", "cre", "cph"),
comment = c(ORCID = "0000-0002-0701-921X"))
Expand Down Expand Up @@ -37,8 +37,8 @@ Collate: 'jlmerclusterperm-package.R' 'aaa.R' 'utils.R'
'clusterpermute.R' 'threshold_search.R' 'tidy.R' 'zzz.R'
'srr-stats-standards.R'
NeedsCompilation: no
Packaged: 2024-02-16 16:21:45 UTC; jchoe
Packaged: 2024-03-01 15:03:56 UTC; jchoe
Author: June Choe [aut, cre, cph] (<https://orcid.org/0000-0002-0701-921X>)
Maintainer: June Choe <jchoe001@gmail.com>
Repository: CRAN
Date/Publication: 2024-02-17 12:20:08 UTC
Date/Publication: 2024-03-04 19:40:02 UTC
59 changes: 37 additions & 22 deletions MD5
@@ -1,27 +1,27 @@
2dbae5b5c4a175b33698a0c1052b2cbd *DESCRIPTION
6d56ca8b826c127780fbea443545d808 *DESCRIPTION
d37c99895d661b1cbb1434dba60e554f *LICENSE
541b075fe8aae1789a052fb365b29f93 *NAMESPACE
33c5675ee0b27451932ea3aaf1d4da25 *NEWS.md
f21a1406cf945348a165d472185c233e *R/aaa.R
f950d344660544218c47a0e3a0fec354 *R/calculate_pvalue.R
134fb9d858c9f0793bfaf6177065065f *R/clusterpermute.R
2d00bfede2f26f999a3bbd426ac55404 *NEWS.md
5602e9533cb1c64203e6be51e9408e73 *R/aaa.R
2f1bb2d926f5cf5ef6926723f28a386e *R/calculate_pvalue.R
aec12bf195b55c6c47f564acc34f7482 *R/clusterpermute.R
97e158c0c4e9c79a768fddb51f698e27 *R/clusters_methods.R
96a330ddf9f5ac5dcb6ba55bad139951 *R/compute_timewise_statistics.R
03270add11e1dae580cca01f047a8ff5 *R/extract_clusters.R
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355f1c701608f14e4ba0d2e980111f6e *R/extract_clusters.R
648603a74bffb4630abd87bea5f4669d *R/interop-utils-unexported.R
644d80db81f6058dd128c72667c89885 *R/interop-utils.R
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d8592a87694f655a89988ced699b1e2b *R/jlmer.R
c39a225244c2a8b55e392bbb75cc08d5 *R/jlmer_spec.R
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dbcbdf24b71cd4e65d3d5cc868975c16 *R/permute.R
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4ef080d714a273e9d13bedd78c51a2f2 *R/permute_timewise_statistics.R
1709a3f2998bb778fdb579b7bef162d6 *R/srr-stats-standards.R
792d7354b4ac135c77b889011704c15f *R/threshold_search.R
db94628cc8d7c39bb4d387b2f97ee1ff *R/tidy.R
f79940ee8173162fe39f4996464eadaf *R/threshold_search.R
d4def322e8a6093d3db51ba87c147b10 *R/tidy.R
41792612dc2971527fa11a6cf7e9a47a *R/utils.R
346a91db172c21d39b08eb328f9c922a *R/zzz.R
58acf23e18b6daddc5923d641af2a3ca *README.md
8981f465259e052f43754ace0e0358db *README.md
2836b2c5db38c9819380bd093383d89d *build/partial.rdb
92050906739ce1b7d9202a0d4477957d *build/vignette.rds
4f8bd692bd5c348aa2512639e959b362 *inst/doc/jlmerclusterperm.R
Expand All @@ -35,17 +35,32 @@ ed3d7d8af4a69e98431f834eb92500ea *inst/julia/JlmerClusterPerm/src/01-utils.jl
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8055afab068a4b488d7769977e6ac192 *inst/julia/JlmerClusterPerm/src/06-permute_timewise_statistics.jl
bb7a18ba62c5d766fc688845d5cd7aa4 *inst/julia/JlmerClusterPerm/src/JlmerClusterPerm.jl
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34eb6e9a2cd58064a651364eeb7ba524 *man/figures/README-plot-empirical_statistics-1.png
37b23af74265d7a1a439baefb5bb2c1d *man/figures/clusterpermute_animation.gif
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Expand All @@ -55,11 +70,11 @@ da15c86688a5645b0a4162997a3e9c63 *man/figures/desktop.ini
9ddeb882f552b0d88e63dfee434e2a72 *man/figures/logo.png
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Expand All @@ -70,8 +85,8 @@ afa48c2a6b860ed001724e02fae79d50 *man/walk_threshold_steps.Rd
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Expand Down
194 changes: 97 additions & 97 deletions NEWS.md
@@ -1,97 +1,97 @@
# jlmerclusterperm 1.1.2

- `jlmerclusterperm()` exposes a `cache_dir` argument for manually specifying the cache directory. This was added largely for the convenience of testing. The default value of `cache_dir = NULL` preserves old behavior.

Fixes for CRAN:

- Write cache to `tempdir()` for the purposes of running examples and tests.

# jlmerclusterperm 1.1.1

- More informative warnings when constructing a spec object

- Fixed minor bugs when interfacing with Julia

- Fixed bug with reporting convergence warnings when only one is encountered

# jlmerclusterperm 1.1.0

Minor breaking change:

- Slightly loosened the default convergence criterion for `permute_timewise_statistics()`

Fixes for CRAN:

- Specified importing `R_user_dir()` from `{backports}` which was missing previously

# jlmerclusterperm 1.0.6

- Fixed bug where `add1` argument to `walk_threshold_steps()` was not being passed down properly

- R < 4.0 falls back to using `{backports}` for `R_user_dir()`

Fixes for CRAN:

- Downgrade DataFrames.jl dependency to 1.3 to avoid a mysterious pre-compilation failure on CRAN windows checks

# jlmerclusterperm 1.0.5

No user-visible changes

Fixes for CRAN:

- Ensure minimum version requirements for Tables.jl and DataAPI.jl are met

# jlmerclusterperm 1.0.4

No user-visible changes

- Restructured internal Julia code into a module (`JlmerClusterPerm.jl`)

- Upon activating project, Manifest.toml is cached to `tools::R_user_dir()` to speed up pre-compilation.

# jlmerclusterperm 1.0.3

Fixes for CRAN:

- Use string for package version comparison

# jlmerclusterperm 1.0.2

### Bug fixes

- `jlmerclusterperm_setup()` now works for rc and alpha builds of Julia

Fixes for CRAN:

- The exclusion of Manifest.toml is now specified in .Rbuildignore - only Project.toml is bundled as intended.

# jlmerclusterperm 1.0.1

`jlmerclusterperm_setup()` now exits early if Julia version requirement (>=1.8) is not met.

Fixes for CRAN:

- Check Julia version requirement before proceeding to examples and tests

# jlmerclusterperm 1.0.0

### Breaking changes

- The `threshold_steps` argument of `walk_threshold_steps()` is renamed to `steps`.

### New features

- New functions to interface with Julia RNG seed: `get_rng_seed()` and `set_rng_seed()`

### Other improvements

- `jlmerclusterperm_setup()` now echos `Pkg.instantiate()` to print precompilation information upon the first setup call

# jlmerclusterperm 0.2.0

Added vignettes. Significant usability improvements

# jlmerclusterperm 0.1.0

Initial release
# jlmerclusterperm 1.1.2

- `jlmerclusterperm()` exposes a `cache_dir` argument for manually specifying the cache directory. This was added largely for the convenience of testing. The default value of `cache_dir = NULL` preserves old behavior.

Fixes for CRAN:

- Write cache to `tempdir()` for the purposes of running examples and tests.

# jlmerclusterperm 1.1.1

- More informative warnings when constructing a spec object

- Fixed minor bugs when interfacing with Julia

- Fixed bug with reporting convergence warnings when only one is encountered

# jlmerclusterperm 1.1.0

Minor breaking change:

- Slightly loosened the default convergence criterion for `permute_timewise_statistics()`

Fixes for CRAN:

- Specified importing `R_user_dir()` from `{backports}` which was missing previously

# jlmerclusterperm 1.0.6

- Fixed bug where `add1` argument to `walk_threshold_steps()` was not being passed down properly

- R < 4.0 falls back to using `{backports}` for `R_user_dir()`

Fixes for CRAN:

- Downgrade DataFrames.jl dependency to 1.3 to avoid a mysterious pre-compilation failure on CRAN windows checks

# jlmerclusterperm 1.0.5

No user-visible changes

Fixes for CRAN:

- Ensure minimum version requirements for Tables.jl and DataAPI.jl are met

# jlmerclusterperm 1.0.4

No user-visible changes

- Restructured internal Julia code into a module (`JlmerClusterPerm.jl`)

- Upon activating project, Manifest.toml is cached to `tools::R_user_dir()` to speed up pre-compilation.

# jlmerclusterperm 1.0.3

Fixes for CRAN:

- Use string for package version comparison

# jlmerclusterperm 1.0.2

### Bug fixes

- `jlmerclusterperm_setup()` now works for rc and alpha builds of Julia

Fixes for CRAN:

- The exclusion of Manifest.toml is now specified in .Rbuildignore - only Project.toml is bundled as intended.

# jlmerclusterperm 1.0.1

`jlmerclusterperm_setup()` now exits early if Julia version requirement (>=1.8) is not met.

Fixes for CRAN:

- Check Julia version requirement before proceeding to examples and tests

# jlmerclusterperm 1.0.0

### Breaking changes

- The `threshold_steps` argument of `walk_threshold_steps()` is renamed to `steps`.

### New features

- New functions to interface with Julia RNG seed: `get_rng_seed()` and `set_rng_seed()`

### Other improvements

- `jlmerclusterperm_setup()` now echos `Pkg.instantiate()` to print precompilation information upon the first setup call

# jlmerclusterperm 0.2.0

Added vignettes. Significant usability improvements

# jlmerclusterperm 0.1.0

Initial release

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