version 0.2.1

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: manynet
 Title: Many Ways to Make, Manipulate, and Map Myriad Networks
-Version: 0.1.1
-Date: 2023-06-09
+Version: 0.2.1
+Date: 2023-08-11
 Description: A set of tools for making, manipulating, and mapping many different types of networks.
    All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
    and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
@@ -16,9 +16,12 @@ Language: en-GB
 Encoding: UTF-8
 LazyData: true
 RoxygenNote: 7.2.3
-Imports: dplyr (>= 1.1.0), ggplot2, ggraph, igraph, network, tidygraph
+Imports: dplyr (>= 1.1.0), ggplot2, ggraph, igraph (>= 1.5.0.1),
+        network, tidygraph
 Suggests: gganimate, methods, readxl, roxygen2, RSiena, testthat, xml2,
-        patchwork
+        patchwork, knitr, rmarkdown, learnr, grDevices, BiocManager,
+        minMSE
+Enhances: Rgraphviz
 Authors@R: 
     c(person(given = "James",
              family = "Hollway",
@@ -31,10 +34,10 @@ Authors@R:
              comment = c("IHEID", ORCID = "0000-0003-3420-6085"))
     )
 NeedsCompilation: no
-Packaged: 2023-06-09 19:19:24 UTC; hollway
+Packaged: 2023-08-11 13:07:02 UTC; hollway
 Author: James Hollway [cre, aut, ctb] (IHEID,
     <https://orcid.org/0000-0002-8361-9647>),
   Henrique Sposito [ctb] (IHEID, <https://orcid.org/0000-0003-3420-6085>)
 Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
 Repository: CRAN
-Date/Publication: 2023-06-10 14:10:02 UTC
+Date/Publication: 2023-08-11 13:40:06 UTC

MD5

@@ -1,74 +1,87 @@
-e04df197c3973e41ae8f02d5556370f4 *DESCRIPTION
+5682971c475d8f91198989f247d133f8 *DESCRIPTION
 361d71c6379f4ddf09ca9c8540b8fea1 *LICENSE
-a5911dbf4336555dd6a6aa44bc5ea148 *NAMESPACE
-f9a53402f2ff37b9056d6da863781480 *NEWS.md
-07862752f654a6b5fab5747f262333c7 *R/data_ison.R
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-2f5f2a17d6765a1b83bbd3ff8d8b34d3 *R/manip_add.R
+3ab8ea40ca6fbb3728177c8ca0f1255c *NAMESPACE
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 53c02b0642c4c2bd507849f3a6f67eb3 *R/manip_from.R
 e9aad6f23cbc1657f3281237185c8908 *R/manip_miss.R
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-b36b2b5c8e39a8bded9b8b6bd88ec9a5 *R/manip_split.R
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 29095322bb905d8551d7577e09a1a815 *R/manip_tidy.R
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 5a485b8100c0667e5fdd249c345a4bff *R/map_attributes.R
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-b5cb63b61c31bae010269a0428be600a *R/map_palette.R
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 79cd003ad6cc4e2ce5a4fccf8362ec5e *R/map_properties.R
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 0282c7ecc85fa60c7d6b987991fb2766 *R/print_classes.R
 33162022353ceac96f9282149c710d90 *R/reexports_classes.R
 5b6bdf57abcbb9776d5b05ae9d0c1192 *R/reexports_ggplot2.R
 c32b17bf67aaa82f9497832d48ffc8b1 *R/sysdata.rda
-fc57376219f96dce9629f67605989b36 *README.md
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 439bf689fa27cf9affd0335332142165 *build/partial.rdb
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-f747adbd19c68d8e2d03e545e32de8b0 *man/ison_brandes.Rd
+abb742a15b0d42220fdf1a9842343908 *man/ison_brandes.Rd
 641f9e92c6a5a93938cb11af8f6680a2 *man/ison_karateka.Rd
+3d3dae69f6654d22e5f1a3d769e95186 *man/ison_konigsberg.Rd
+d2b34f7444de9f5f84b4194c4be507c4 *man/ison_laterals.Rd
 363a5584ba45f3d348b54de3ec6e37f1 *man/ison_lotr.Rd
-39018588f2ad52520528dcd51b837989 *man/ison_marvel.Rd
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 8af25118b798ee1918429e28c169580f *man/ison_networkers.Rd
-1075e2328ca3f0058678fdeeb55c4dde *man/ison_projection.Rd
 489b7ee3f4807dc597cd78f6fa5d92a7 *man/ison_southern_women.Rd
-0a7f2779e1b7388e666eaf5ed2f7365d *man/miss.Rd
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+389ed0f7a8c898a6f4e51eae2e4dedb6 *man/properties.Rd
+83afbd68939135cccb533a3d78dfe13c *man/read.Rd
 74cd9b0a7752d1047ee138a8936950bd *man/reexports.Rd
-b606898920d421c996fac53972fb439c *man/reformat.Rd
-c77c85d1c6b8bdaa807f4dec8f811bfc *man/split.Rd
-00bf620ca6b52bedf4abe6f13cd45b94 *man/tidy.Rd
-eebda4001a386b8f3394f0d159c56e7d *man/transform.Rd
+76dfe722f52ddcf2ba64725e261dfdf2 *man/reformat.Rd
+98a4acacc3b543d909a6982eb1533054 *man/split.Rd
+5aa570e908958357e0b8f0be069f4e5b *man/themes.Rd
+1467c5cf3b719c40514260257c027b5b *man/tidy.Rd
+862b995f8ce91e77fb4695e38f1c1762 *man/transform.Rd
 594c90777a4f17666af95dce0dbb4d17 *tests/testthat.R
 4a312f7e35283b4c0b85e800491103e5 *tests/testthat/sheets/SouthernWomen.paj
 89a78d83fa6c80560955c6f2dc887e33 *tests/testthat/sheets/SouthernWomen.xml
@@ -81,16 +94,17 @@ efec1c3e6d8f1ef526d40df7c87c0b56 *tests/testthat/sheets/test_matrix.csv
 327266b6086e4cbea4f27a0f6b1dedbf *tests/testthat/sheets/ucinettest.##d
 bdd9ad82944ff4c6cc1171e853071012 *tests/testthat/sheets/ucinettest.##h
 bdd9ad82944ff4c6cc1171e853071012 *tests/testthat/sheets/ucinettest1.##h
-496eab437fcbe3ac78f959136c46346a *tests/testthat/test-make_create.R
+6e36522f661de1ec7c05f2b5d7493f34 *tests/testthat/test-make_create.R
 9fa727b7cffe964ca8637cb47cd8341d *tests/testthat/test-make_generate.R
 cdbac54b8a56d7007e5696222d913847 *tests/testthat/test-make_read.R
-4fe048fce4f3450cf2fe7be86a023909 *tests/testthat/test-manip_add.R
+75c447fe8a95ea6707ced6fd999b4853 *tests/testthat/test-manip_add.R
 e704b7958c4e61614d5f3d6ca466fd46 *tests/testthat/test-manip_as.R
 b51f8cdc30203b9774ece4f36ec6bcea *tests/testthat/test-manip_grab.R
 b644d01d099d612cc806972a4ad28c84 *tests/testthat/test-manip_miss.R
-ea203626cbfac1f80f543147fc87eda1 *tests/testthat/test-manip_reformat.R
+d7a9db995bdb8e37043eec3b2614d23b *tests/testthat/test-manip_reformat.R
 6a03770649c99095fb7a58a9ba04fd53 *tests/testthat/test-manip_split.R
-004520bac4563e2121e419a055d7fbeb *tests/testthat/test-manip_transform.R
-d4921f1bc37d27eafd013aa409199724 *tests/testthat/test-mark_is.R
+47b2d9d25c1b81d27a4439995ac5f7c6 *tests/testthat/test-manip_transform.R
+323d7aae6d20f03784af0c4da77b19ea *tests/testthat/test-map_autographr.R
+d699c2b2e6326cd476b4f1539b22b53a *tests/testthat/test-map_is.R
 805f7fd21fcb36696bce345246b6c741 *tests/testthat/test-print_class.R
-fc83cd52c840f70a645b3da9a6f018b3 *tests/testthat/test-viz_autographr.R
+04d5192ce082546e899ea7bb5250e7e4 *tests/testthat/test_plots.R

NAMESPACE

@@ -50,6 +50,7 @@ S3method(as_tidygraph,network)
 S3method(as_tidygraph,network.goldfish)
 S3method(as_tidygraph,siena)
 S3method(as_tidygraph,tbl_graph)
+S3method(delete_nodes,igraph)
 S3method(is_complex,data.frame)
 S3method(is_complex,igraph)
 S3method(is_complex,matrix)
@@ -140,6 +141,8 @@ S3method(to_egos,igraph)
 S3method(to_egos,matrix)
 S3method(to_egos,network)
 S3method(to_egos,tbl_graph)
+S3method(to_eulerian,igraph)
+S3method(to_eulerian,tbl_graph)
 S3method(to_giant,data.frame)
 S3method(to_giant,igraph)
 S3method(to_giant,matrix)
@@ -262,11 +265,13 @@ export(bind_node_attributes)
 export(create_components)
 export(create_core)
 export(create_empty)
+export(create_explicit)
 export(create_filled)
 export(create_lattice)
 export(create_ring)
 export(create_star)
 export(create_tree)
+export(delete_nodes)
 export(filter_ties)
 export(from_egos)
 export(from_slices)
@@ -284,23 +289,33 @@ export(guides)
 export(is.igraph)
 export(is.network)
 export(is.tbl_graph)
+export(is_acyclic)
+export(is_aperiodic)
 export(is_bipartite)
 export(is_complex)
+export(is_connected)
 export(is_directed)
 export(is_dynamic)
 export(is_edgelist)
+export(is_eulerian)
 export(is_graph)
 export(is_labelled)
 export(is_longitudinal)
 export(is_manynet)
 export(is_multiplex)
+export(is_perfect_matching)
 export(is_signed)
 export(is_twomode)
 export(is_uniplex)
 export(is_weighted)
 export(join_nodes)
 export(join_ties)
 export(labs)
+export(layout_tbl_graph_alluvial)
+export(layout_tbl_graph_concentric)
+export(layout_tbl_graph_hierarchy)
+export(layout_tbl_graph_ladder)
+export(layout_tbl_graph_railway)
 export(mutate)
 export(mutate_ties)
 export(na_to_mean)
@@ -323,6 +338,7 @@ export(rename)
 export(rename_ties)
 export(select_ties)
 export(summarise_ties)
+export(theme_iheid)
 export(tie_attribute)
 export(tie_signs)
 export(tie_weights)
@@ -332,6 +348,7 @@ export(to_blocks)
 export(to_components)
 export(to_directed)
 export(to_egos)
+export(to_eulerian)
 export(to_giant)
 export(to_matching)
 export(to_mode1)
@@ -407,6 +424,7 @@ importFrom(ggraph,scale_edge_width_continuous)
 importFrom(igraph,E)
 importFrom(igraph,V)
 importFrom(igraph,add_edges)
+importFrom(igraph,add_vertices)
 importFrom(igraph,any_multiple)
 importFrom(igraph,as.directed)
 importFrom(igraph,as.undirected)
@@ -416,25 +434,30 @@ importFrom(igraph,as_incidence_matrix)
 importFrom(igraph,bipartite.projection)
 importFrom(igraph,complementer)
 importFrom(igraph,decompose)
+importFrom(igraph,degree)
 importFrom(igraph,delete_edge_attr)
 importFrom(igraph,delete_edges)
 importFrom(igraph,delete_vertex_attr)
+importFrom(igraph,delete_vertices)
 importFrom(igraph,edge_attr)
 importFrom(igraph,edge_attr_names)
+importFrom(igraph,eulerian_path)
 importFrom(igraph,get.edgelist)
 importFrom(igraph,get.vertex.attribute)
 importFrom(igraph,graph_from_adjacency_matrix)
 importFrom(igraph,graph_from_data_frame)
 importFrom(igraph,graph_from_incidence_matrix)
 importFrom(igraph,gsize)
 importFrom(igraph,induced_subgraph)
+importFrom(igraph,is.connected)
 importFrom(igraph,is.directed)
 importFrom(igraph,is.igraph)
 importFrom(igraph,is.loop)
 importFrom(igraph,is.named)
 importFrom(igraph,is.simple)
 importFrom(igraph,is.weighted)
 importFrom(igraph,is_bipartite)
+importFrom(igraph,is_dag)
 importFrom(igraph,list.vertex.attributes)
 importFrom(igraph,make_ego_graph)
 importFrom(igraph,make_lattice)

NEWS.md

@@ -1,3 +1,58 @@
+# manynet 0.2.1
+
+2023-08-11
+
+## Map
+
+* Fixed documentation issues with map_palettes
+
+# manynet 0.2.0
+
+2023-08-11
+
+## Package 
+
+* Closed #4 by adding `thisRequiresBio()` helper function to download Bioconductor packages
+* Upgraded ison data to latest igraph specification
+  * Added `ison_konigsberg` for illustrating Seven Bridges of Konigsberg
+  * Removed `ison_brandes2` and added potential modal type as extra variable to `ison_brandes`
+  * Consolidated `ison_bb`, `ison_bm`, `ison_mb`, and `ison_mm` into a list of networks called `ison_laterals`
+
+## Make
+
+* Added `create_explicit()` for creating networks based on explicit nodes and ties
+
+## Manip
+
+* Added `delete_nodes()` for deleting specific nodes
+* Added `to_eulerian()` function that returns a Eulerian path network, if available, from a given network
+
+## Map
+
+* Moved additional `is_` functions from `{migraph}`
+  * Added `is_connected()` to test if network is strongly connected
+  * Added `is_perfect_matching()` to test if there is a matching for every node in the network
+  * Added `is_eulerian()` to test whether there is a Eulerian path for a network
+  * Added `is_acyclic` to test whether network is a directed acyclic graph
+  * Added `is_aperiodic` to test whether network is aperiodic
+* Added partition layouts
+  * Added `layout_tbl_graph_alluvial()` that places successive layers horizontally
+  * Added `layout_tbl_graph_concentric()`that places a "hierarchy" layout around a circle
+  * Added `layout_tbl_graph_hierarchy()` that layers the nodes along the top and bottom sequenced to minimise overlap
+  * Added `layout_tbl_graph_ladder()`that aligns nodes across successive layers horizontally
+  * Added `layout_tbl_graph_railway`  that aligns nodes across successive layers vertically
+* Added `theme_iheid()` function that themes graphs with colors based on the Geneva Graduate Institute
+
+# manynet 0.1.2
+
+2023-06-20
+
+## Package
+
+- Added tutorials for package
+  - Moved and updated "data" tutorial from `{migraph}` 
+  - Moved and updated "visualisations" tutorial from `{migraph}`
+
 # manynet 0.1.1
 
 2023-06-09