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manciniedoardo authored and cran-robot committed Jul 2, 2024
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16 changes: 9 additions & 7 deletions DESCRIPTION
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Package: pharmaverseadam
Type: Package
Title: ADaM Test Data for the 'Pharmaverse' Family of Packages
Version: 0.2.0
Version: 1.0.0
Authors@R: c(
person("Edoardo", "Mancini", email = "edoardo.mancini@roche.com", role = c("aut", "cre")),
person("Kangjie", "Zhang", role = "aut"),
person("Stefan", "Bundfuss", role = "aut"),
person("Gayatri", "G", role = "aut"),
person("Daphne", "Grassely", role = "aut"),
person("Zelos", "Zhu", role = "aut")
person("Zelos", "Zhu", role = "aut"),
person("Sadchla", "Mascary", role = "aut")
)
Description: A set of Analysis Data Model (ADaM) datasets constructed using the
Study Data Tabulation Model (SDTM) datasets contained in the 'pharmaversesdtm' package and
the template scripts from the 'admiral' family of packages. ADaM dataset specifications are
described in: CDISC Analysis Data Model Team
(2021) <https://www.cdisc.org/system/files/members/standard/foundational/ADaMIG_v1.3.pdf>.
License: Apache License (>= 2)
URL: https://pharmaverse.github.io/pharmaverseadam/main/,
URL: https://pharmaverse.github.io/pharmaverseadam/,
https://github.com/pharmaverse/pharmaverseadam/
Encoding: UTF-8
Language: en-US
LazyData: true
LazyDataCompression: bzip2
RoxygenNote: 7.2.3
RoxygenNote: 7.3.1
Depends: R (>= 3.5)
Imports:
Suggests: covr, devtools, diffdf, DT, knitr, lintr, methods, miniUI,
pkgdown, rmarkdown, roxygen2, spelling, testthat (>= 3.0.0),
tibble, usethis, metacore, metatools
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2024-01-05 12:26:07 UTC; mancinie
Packaged: 2024-07-01 08:09:47 UTC; mancinie
Author: Edoardo Mancini [aut, cre],
Kangjie Zhang [aut],
Stefan Bundfuss [aut],
Gayatri G [aut],
Daphne Grassely [aut],
Zelos Zhu [aut]
Zelos Zhu [aut],
Sadchla Mascary [aut]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>
Repository: CRAN
Date/Publication: 2024-01-08 13:30:05 UTC
Date/Publication: 2024-07-01 09:30:02 UTC
144 changes: 72 additions & 72 deletions MD5
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79be7a0e15b981ddd7714c084c88186f *DESCRIPTION
2bf3be9bbdc4f2f2837e93a9f8f50d2e *DESCRIPTION
dc21c19f0d6968ee25d441b2cf46017d *NAMESPACE
8d7a092431082484bdf828ee934ff028 *NEWS.md
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436d524bd5971b6a83263ec2a885d057 *R/adrs_onco.R
62a64f4aefc668642339d18451aff4c0 *R/adsl.R
4c46afb137fc65ab88c1342e47b77349 *R/adsl_vaccine.R
cdc6196d49b30f7efa06593c91d53c4c *R/adtr_onco.R
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10 changes: 9 additions & 1 deletion NEWS.md
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# pharmaverseadam 1.0.0

## Documentation
- The first stable version of `{pharmaverseadam}`!
- Dataset labels are updated to align with ADaM IG (#64)
- Refreshed `{pharmaverseadam}` datasets using `{admiral}` 1.1.1, `{admiralophtha}` 1.1.0, `{admiralonco}` 1.1.0, `{admiralvaccine}` 0.2.0. (#58)

# pharmaverseadam 0.2.0

## New Features

- Variables labels are applied to datasets by `metacore`/`metatools`.
- Variables labels are applied to datasets by `metacore`/`metatools`. (#50)
- ADPC, ADPPK and ADPP are updated to handle urine records. (#57)

# pharmaverseadam 0.1.1

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5 changes: 3 additions & 2 deletions R/adae.R
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#' Dataset adae
#' Adverse Events Analysis
#'
#' An example of ADAE ADaM dataset
#'
#' adae dataset
#'
#' @name adae
#' @docType data
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4 changes: 2 additions & 2 deletions R/adbcva_ophtha.R
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#' Dataset adbcva_ophtha
#' Best Corrected Visual Acuity Analysis
#'
#' adbcva_ophtha dataset
#' An example of ADBCVA ADaM dataset for Ophthalmology studies
#'
#' @name adbcva_ophtha
#' @docType data
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4 changes: 2 additions & 2 deletions R/adce_vaccine.R
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#' Dataset adce_vaccine
#' Clinical Events Analysis for Vaccine
#'
#' adce_vaccine dataset
#' An example of ADCE dataset for Vaccine studies
#'
#' @name adce_vaccine
#' @docType data
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4 changes: 2 additions & 2 deletions R/adcm.R
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#' Dataset adcm
#' Concomitant Medications Analysis
#'
#' adcm dataset
#' An example of ADCM ADaM dataset
#'
#' @name adcm
#' @docType data
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4 changes: 2 additions & 2 deletions R/adeg.R
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#' Dataset adeg
#' Electrocardiogram Tests Analysis
#'
#' adeg dataset
#' An example of ADEG ADaM dataset
#'
#' @name adeg
#' @docType data
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4 changes: 2 additions & 2 deletions R/adex.R
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#' Dataset adex
#' Exposure Analysis
#'
#' adex dataset
#' An example of ADEX ADaM dataset
#'
#' @name adex
#' @docType data
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4 changes: 2 additions & 2 deletions R/adface_vaccine.R
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#' Dataset adface_vaccine
#' Findings About Clinical Events Analysis
#'
#' adface_vaccine dataset
#' An example of ADFACE for Vaccine studies
#'
#' @name adface_vaccine
#' @docType data
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4 changes: 2 additions & 2 deletions R/adis_vaccine.R
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#' Dataset adis_vaccine
#' Immunogenicity Specimen Assessments
#'
#' adis_vaccine dataset
#' An example of ADIS dataset for Vaccine studies
#'
#' @name adis_vaccine
#' @docType data
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4 changes: 2 additions & 2 deletions R/adlb.R
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#' Dataset adlb
#' Laboratory Analysis
#'
#' adlb dataset
#' An example of ADLB ADaM dataset
#'
#' @name adlb
#' @docType data
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4 changes: 2 additions & 2 deletions R/adlbhy.R
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#' Dataset adlbhy
#' Analysis of Lab Hy's Law
#'
#' adlbhy dataset
#' A template of the ADLBHY dataset
#'
#' @name adlbhy
#' @docType data
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4 changes: 2 additions & 2 deletions R/admh.R
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#' Dataset admh
#' Medical History Analysis
#'
#' admh dataset
#' A template of ADMH ADaM dataset
#'
#' @name admh
#' @docType data
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4 changes: 2 additions & 2 deletions R/adoe_ophtha.R
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#' Dataset adoe_ophtha
#' Exam Analysis for Ophthalmology
#'
#' adoe_ophtha dataset
#' An example of ADOE dataset for Ophthalmology studies
#'
#' @name adoe_ophtha
#' @docType data
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7 changes: 4 additions & 3 deletions R/adpc.R
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#' Dataset adpc
#' Pharmacokinetic Concentrations
#'
#' adpc dataset
#' An example of ADPC dataset
#'
#' @name adpc
#' @docType data
#' @format A data frame with 122 columns:
#' @format A data frame with 123 columns:
#' \describe{
#' \item{ STUDYID }{Study Identifier}
#' \item{ USUBJID }{Unique Subject Identifier}
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#' \item{ PCRFTDT }{Reference Date of Dose for Analyte}
#' \item{ PCRFTTM }{Reference Time of Dose for Analyte}
#' \item{ NRRLT }{Nominal Rel. Time from Ref. Dose}
#' \item{ PARCAT1 }{Parameter Category 1}
#' \item{ ATPTN }{Analysis Timepoint (N)}
#' \item{ ATPT }{Analysis Timepoint}
#' \item{ ATPTREF }{Analysis Timepoint Reference}
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15 changes: 8 additions & 7 deletions R/adpp.R
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#' Dataset adpp
#' Pharmacokinetic Parameters
#'
#' adpp dataset
#' An example of ADPP ADaM dataset
#'
#' @name adpp
#' @docType data
#' @format A data frame with 74 columns:
#' @format A data frame with 75 columns:
#' \describe{
#' \item{ STUDYID }{Study Identifier}
#' \item{ USUBJID }{Unique Subject Identifier}
Expand All @@ -25,15 +25,16 @@
#' \item{ ADT }{Analysis Date}
#' \item{ ADY }{Analysis Relative Day}
#' \item{ PARAMCD }{Parameter Code}
#' \item{ PARCAT1 }{Parameter Category}
#' \item{ AVAL }{Numeric Result/Finding in Standard Units}
#' \item{ AVALC }{Character Result/Finding in Std Format}
#' \item{ AVALU }{Standard Units}
#' \item{ SRCDOM }{Domain Abbreviation}
#' \item{ SRCVAR }{Source Variable}
#' \item{ SRCSEQ }{Sequence Number}
#' \item{ VISIT }{Visit Name}
#' \item{ VISITNUM }{Visit Number}
#' \item{ AVISIT }{Analysis Visit}
#' \item{ AVISITN }{Analysis Visit (N)}
#' \item{ AVISIT }{Analysis Visit}
#' \item{ VISITNUM }{Visit Number}
#' \item{ VISIT }{Visit Name}
#' \item{ TRTP }{Planned Treatment}
#' \item{ TRTA }{Actual Treatment}
#' \item{ AVALCA1N }{Analysis Value Category 1 (N)}
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