version 1.4.1

DESCRIPTION

@@ -1,12 +1,25 @@
-Package: rtiff
-Type: Package
-Title: A tiff reader for R.
-Version: 1.4
-Date: 2009-01-21
-Depends: pixmap
-Author: Eric Kort
-Maintainer: Eric Kort <eric.kort@vai.org>
-SystemRequirements: libtiff
-Description: This package will read (and, as of version 1.1, write) TIFF format images and return them as a pixmap object. Because the resulting object can be very large for even modestly sized TIFF images, images can be reduced as they are read for improved performance.  This package is a wrapper around libtiff (www.libtiff.org), on which it depends (i.e. the libtiff shared library must be on your PATH for the binary to work, and tiffio.h must be on your system to build the package from source).  By using libtiff's highlevel TIFFReadRGBAImage function, this package inherently support a wide range of image formats and compression schemes.  This package also provides an implementation of the Ridler Autothresholding algorithm for easy generation of binary masks.
-License: file LICENSE
-Packaged: Thu Jan 22 09:17:22 2009; Eric.Kort
+Package: rtiff
+Type: Package
+Title: A tiff reader for R.
+Version: 1.4.1
+Date: 2010-01-30
+Depends: pixmap
+Author: Eric Kort
+Maintainer: Eric Kort <eric.kort@vai.org>
+SystemRequirements: libtiff
+Description: This package will read and write TIFF format images and
+        return them as a pixmap object. Because the resulting object
+        can be very large for even modestly sized TIFF images, images
+        can be reduced as they are read for improved performance.  This
+        package is a wrapper around libtiff (www.libtiff.org), on which
+        it depends (i.e. the libtiff shared library must be on your
+        PATH for the binary to work, and tiffio.h must be on your
+        system to build the package from source). By using libtiff's
+        highlevel TIFFReadRGBAImage function, this package inherently
+        support a wide range of image formats and compression schemes.
+        This package also provides an implementation of the Ridler
+        Autothresholding algorithm for easy generation of binary masks.
+License: file LICENSE
+Packaged: 2012-01-24 16:34:21 UTC; ripley
+Repository: CRAN
+Date/Publication: 2012-01-24 16:35:31

LICENSE

@@ -1,27 +1,27 @@
-This package depends upon the libtiff package (www.remotesensing.org/libtiff), 
-which has the following license:
-
-Copyright (c) 1988-1997 Sam Leffler
-Copyright (c) 1991-1997 Silicon Graphics, Inc.
-
-Permission to use, copy, modify, distribute, and sell this software and 
-its documentation for any purpose is hereby granted without fee, provided
-that (i) the above copyright notices and this permission notice appear in
-all copies of the software and related documentation, and (ii) the names of
-Sam Leffler and Silicon Graphics may not be used in any advertising or
-publicity relating to the software without the specific, prior written
-permission of Sam Leffler and Silicon Graphics.
-
-THE SOFTWARE IS PROVIDED "AS-IS" AND WITHOUT WARRANTY OF ANY KIND, 
-EXPRESS, IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY 
-WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  
-
-IN NO EVENT SHALL SAM LEFFLER OR SILICON GRAPHICS BE LIABLE FOR
-ANY SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND,
-OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
-WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY OF 
-LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE 
-OF THIS SOFTWARE.
-
-Any portions of the package which do not depend upon libtiff are placed 
+This package depends upon the libtiff package (www.remotesensing.org/libtiff), 
+which has the following license:
+
+Copyright (c) 1988-1997 Sam Leffler
+Copyright (c) 1991-1997 Silicon Graphics, Inc.
+
+Permission to use, copy, modify, distribute, and sell this software and 
+its documentation for any purpose is hereby granted without fee, provided
+that (i) the above copyright notices and this permission notice appear in
+all copies of the software and related documentation, and (ii) the names of
+Sam Leffler and Silicon Graphics may not be used in any advertising or
+publicity relating to the software without the specific, prior written
+permission of Sam Leffler and Silicon Graphics.
+
+THE SOFTWARE IS PROVIDED "AS-IS" AND WITHOUT WARRANTY OF ANY KIND, 
+EXPRESS, IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY 
+WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  
+
+IN NO EVENT SHALL SAM LEFFLER OR SILICON GRAPHICS BE LIABLE FOR
+ANY SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND,
+OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
+WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY OF 
+LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE 
+OF THIS SOFTWARE.
+
+Any portions of the package which do not depend upon libtiff are placed 
 under the GNU General Public License, version 3.0 or later.

MD5

@@ -0,0 +1,27 @@
+e8664ccf53ced5180654fb91e1be7d97 *DESCRIPTION
+99cf42fffc53d0dbfefd8bc8f8728ea8 *LICENSE
+a2f48e7f2b2bfee57e5d65ace0bf8c32 *NAMESPACE
+9f3549f70c8df34ba0ec2893ca1215ca *R/autoThreshold.R
+9d8ffcc8cf5bccaf171ae53e732128e1 *R/getDescription.R
+fec1793e2150b51c54a6ab8907ef48ef *R/newPixmapRGB.R
+a71bae4710db7b0380a0f55522156843 *R/plot.matrix.R
+bb135cf6a30baec48f2c1e150631a12d *R/readTiff.R
+8eadfda230b2013922cc9abeadd79c8c *R/updateDescription.R
+7c4d0d58d0736e2851315b326f0ff8eb *R/writeTiff.R
+465d57694acbeee1225885d40049ecc9 *configure
+bce1bd359c045e19e938e05c1d17609e *configure.in
+8e1eb8f6aa9c72998ff995e860943922 *inst/tiff/jello.tif
+f0d7bcb90496c323c880a9773dfe93ff *inst/tiff/quad-jpeg.tif
+3fa7bd7cf706309489ab8e0425eb49aa *inst/tiff/t1.tif
+b33326eedd1914f2a92bbbc31d954596 *man/autoThreshold.Rd
+73a2de8319565a14cbf61959bc32bc9d *man/getDescription.Rd
+01e5e8e67f15cbb1f99a4f839e6520f8 *man/newPixmapRGB.Rd
+372c5eb3e65a1e2eb9c642d552cb21bc *man/plot.matrix.Rd
+6182d360b978af8dc3d4a5573b05d722 *man/readTiff.Rd
+a9929e74a735ef0b5e0679e609211383 *man/rtiff.package.Rd
+e2a8fbb665253da2e778c7e64cb8d340 *man/updateDescription.Rd
+e82e788210b4c0e06e98e83ffd530aae *man/writeTiff.Rd
+29bcb3becaa8ef7e9be1743a623b829e *src/Makevars
+226cb8d694b6dd8fafeb3d5c3fc616fc *src/Makevars.in
+5be412c81811c1db36131b5255f4729e *src/Makevars.win
+5aa433b68a6371850b63ea32806b7c0e *src/rtiff.c

NAMESPACE

@@ -1,3 +1,4 @@
+useDynLib("rtiff")
 
 export(
 readTiff,

man/autoThreshold.Rd

@@ -24,14 +24,9 @@ autoThreshold(d.m, est = 0.5)
 \references{ Ridler T, Calvard S. Picture thresholding using an iterative selection method. IEEE Trans on Systems Man and Cybernetics, SMC 8;630-2. }
 \author{ Eric Kort <eric.kort@vai.org> }
 \examples{
-
-library(rtiff)
-tif <- readTiff(paste(.path.package("rtiff"), "/tiff/jello.tif", sep=""))
+tif <- readTiff(system.file("tiff", "jello.tif", package="rtiff"))
 threshold <- autoThreshold(tif@red)
 plot(tif)
-
-getOption("device")()
-
 plot(tif@red > threshold[3])
 }
 \keyword{ utilities }

man/getDescription.Rd

@@ -11,14 +11,15 @@ getDescription(fn)
   \item{fn}{ The name of the tiff file. }
 }
 \value{
-  A string with the description field from the TIFF file.
+  A string with the description field from the TIFF file, or \code{NA}
+  if there is no such field.
 }
 \author{ Eric Kort <eric.kort@vai.org> }
 \examples{
-
-library(rtiff)
-tif <- readTiff(paste(.path.package("rtiff"), "/tiff/jello.tif", sep=""))
-getDescription(paste(.path.package("rtiff"), "/tiff/jello.tif", sep=""))
+# This has no description
+getDescription(system.file("tiff", "jello.tif", package="rtiff"))
+# but this has
+getDescription(system.file("tiff", "t1.tif", package="rtiff"))
 }
 \keyword{ utilities }
 \keyword{ IO }

man/newPixmapRGB.Rd

@@ -20,8 +20,7 @@ newPixmapRGB(red = NULL, green = NULL, blue = NULL)
 \examples{
 
 #this is tautological, but demonstrates the syntax...
-library(rtiff)
-tif <- readTiff(paste(.path.package("rtiff"), "/tiff/jello.tif", sep=""))
+tif <- readTiff(system.file("tiff", "jello.tif", package="rtiff"))
 myPixmap <- newPixmapRGB(tif@red, tif@green, tif@blue)
 plot(myPixmap)
 

man/plot.matrix.Rd

@@ -7,7 +7,7 @@
   channel), and then plotting the resulting image.
 }
 \usage{
-plot.matrix(x, ...)
+\S3method{plot}{matrix}(x, ...)
 }
 %- maybe also 'usage' for other objects documented here.
 \arguments{
@@ -19,11 +19,7 @@ plot.matrix(x, ...)
 }
 \author{ Eric Kort <eric.kort@vai.org> }
 \examples{
-
-library(rtiff)
-tif <- readTiff(paste(.path.package("rtiff"), "/tiff/jello.tif", sep=""))
-
+tif <- readTiff(system.file("tiff", "jello.tif", package="rtiff"))
 plot(tif@red) 
-
 }
 \keyword{ utilities }

man/readTiff.Rd

@@ -1,58 +1,54 @@
-\name{readTiff}
-\alias{readTiff}
-\title{ A function to load TIFF images into a pixmap. }
-\description{
-  Loads a TIFF image from a file and returns the image as a pixmap object, with optional scaling.
-}
-\usage{
-readTiff(fn, page = 0, reduce = 0)
-}
-%- maybe also 'usage' for other objects documented here.
-\arguments{
-  \item{fn}{ Filename (the tiff image to load) }
-  \item{page}{ In the case of multi-page tiffs, which page do you want? }
-  \item{reduce}{ Optional scaling factor to improve performance with large images, 
-                 should be a value between 0 and 1 (i.e. a decimal representation of 
-                 a percentage).  See details. }
-}
-\details{
-
-
-This package is a wrapper around libtiff (www.libtiff.org), on which it depends.  By using libtiff's 
-highlevel TIFFReadRGBAImage function, this package inherently support a wide range of image formats 
-and compression schemes (interestingly, thanks to libtiff, this package can load a number of TIFF formats 
-that tools like Window's Paint or the open source Gimp application will not load).
-
-High resolution images (by which I mean images that contain a "large" number of pixels) will occupy 
-quite a bit of memory and will also plot very slowly.  If you do not need all the resolution for your
-purposes, you scan specify a scaling factor (reduce=x) to downsample the image.  The factor is the 
-amount you want the image scaled BY, not TO.  In otherwords, reduce=.90 will reduce the image by 90%, 
-yielding an image 10% the size of the orginal.  The scaling is not sophisticated...a nearest neighbor 
-approach is used.  Since we are reducing and not enlarging, I hope this will be suitable for your 
-applications.
-
-For simplicity, an RGB pixmap is generated regardless of the colorspace of the original image (including
-grayscale images, in which case the R, G, and B rasters are identical).  The pixmap object requires 
-pixel intensities to be between 0 and 1, so the intensities in the orginal image file are scaled 
-accordingly.
-
-}
-\value{
-   A pixmap object containing the image rasters.
-}
-
-\author{ Eric Kort <eric.kort@vai.org> }
-
-
-\examples{
-
-library(rtiff)
-tif <- readTiff(paste(.path.package("rtiff"), "/tiff/jello.tif", sep=""))
-plot(tif)
-
-
-}
-
-\keyword{ utilities }
-\keyword{ IO }
-\keyword{ file }
+\name{readTiff}
+\alias{readTiff}
+\title{ A function to load TIFF images into a pixmap. }
+\description{
+  Loads a TIFF image from a file and returns the image as a pixmap object, with optional scaling.
+}
+\usage{
+readTiff(fn, page = 0, reduce = 0)
+}
+%- maybe also 'usage' for other objects documented here.
+\arguments{
+  \item{fn}{ Filename (the tiff image to load) }
+  \item{page}{ In the case of multi-page tiffs, which page do you want? }
+  \item{reduce}{ Optional scaling factor to improve performance with large images, 
+                 should be a value between 0 and 1 (i.e. a decimal representation of 
+                 a percentage).  See details. }
+}
+\details{
+
+
+This package is a wrapper around libtiff (www.libtiff.org), on which it depends.  By using libtiff's 
+highlevel TIFFReadRGBAImage function, this package inherently support a wide range of image formats 
+and compression schemes (interestingly, thanks to libtiff, this package can load a number of TIFF formats 
+that tools like Window's Paint or the open source Gimp application will not load).
+
+High resolution images (by which I mean images that contain a "large" number of pixels) will occupy 
+quite a bit of memory and will also plot very slowly.  If you do not need all the resolution for your
+purposes, you scan specify a scaling factor (reduce=x) to downsample the image.  The factor is the 
+amount you want the image scaled BY, not TO.  In otherwords, reduce=.90 will reduce the image by 90%, 
+yielding an image 10% the size of the orginal.  The scaling is not sophisticated...a nearest neighbor 
+approach is used.  Since we are reducing and not enlarging, I hope this will be suitable for your 
+applications.
+
+For simplicity, an RGB pixmap is generated regardless of the colorspace of the original image (including
+grayscale images, in which case the R, G, and B rasters are identical).  The pixmap object requires 
+pixel intensities to be between 0 and 1, so the intensities in the orginal image file are scaled 
+accordingly.
+
+}
+\value{
+   A pixmap object containing the image rasters.
+}
+
+\author{ Eric Kort <eric.kort@vai.org> }
+
+
+\examples{
+tif <- readTiff(system.file("tiff", "jello.tif", package="rtiff"))
+plot(tif)
+}
+
+\keyword{ utilities }
+\keyword{ IO }
+\keyword{ file }

man/rtiff.package.Rd

@@ -43,7 +43,7 @@ Maintainer: Eric Kort <eric.kort@vai.org>
 
 \examples{
 library(rtiff)
-tif <- readTiff(paste(.path.package("rtiff"), "/tiff/jello.tif", sep=""))
+tif <- readTiff(system.file("tiff", "jello.tif", package="rtiff"))
 plot(tif)
 
 

man/updateDescription.Rd

@@ -15,8 +15,6 @@ updateDescription(fn, description)
 None.
 }
 \author{ Eric Kort <eric.kort@vai.org> }
-\examples{
-}
 \keyword{ utilities }
 \keyword{ IO }
 \keyword{ file }