version 1.3.1

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: sen2r
 Type: Package
 Title: Find, Download and Process Sentinel-2 Data
-Version: 1.3.0
+Version: 1.3.1
 Authors@R: c(person("Luigi", "Ranghetti",
                     email = "luigi@ranghetti.info",
                     role = c("aut", "cre"),
@@ -21,7 +21,7 @@ Encoding: UTF-8
 URL: http://sen2r.ranghetti.info, https://github.com/ranghetti/sen2r
 BugReports: https://github.com/ranghetti/sen2r/issues
 Depends: R (>= 3.5.0)
-Imports: methods, rgdal, sf, stars, data.table, raster, XML, jsonlite,
+Imports: methods, sf, stars, data.table, raster, XML, jsonlite,
         geojsonio, leaflet, leaflet.extras, mapedit, shiny, shinyFiles,
         shinydashboard, shinyjs, shinyWidgets, foreach, parallel,
         doParallel, units, tools, httr
@@ -34,9 +34,9 @@ VignetteBuilder: knitr
 RoxygenNote: 7.0.2
 Language: en-GB
 NeedsCompilation: no
-Packaged: 2020-02-04 06:27:05 UTC; lranghetti
+Packaged: 2020-02-07 07:06:31 UTC; lranghetti
 Author: Luigi Ranghetti [aut, cre] (<https://orcid.org/0000-0001-6207-5188>),
   Lorenzo Busetto [aut] (<https://orcid.org/0000-0001-9634-6038>)
 Maintainer: Luigi Ranghetti <luigi@ranghetti.info>
 Repository: CRAN
-Date/Publication: 2020-02-04 08:50:02 UTC
+Date/Publication: 2020-02-07 12:10:02 UTC

MD5

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 6ee3d9c5d7d65c2c860eb3e41a0b99a1 *tests/testthat/test-t13_install_sen2cor.R
-0066e5aa369e3da38f5917069a7cf773 *tests/testthat/test-t14_sen2cor.R
+3fab5778c1d5ddc168f9a1546a8b8da9 *tests/testthat/test-t14_sen2cor.R
 b750d7bd8ca7617dc01eb914f93f62de *tests/testthat/test-t15_s2_order.R
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-97763b16dd2a932371d0346b6e38cdff *tests/testthat/test-t22_s2_mask.R
-911e6550e53ea5760941c51062e29e93 *tests/testthat/test-t23_s2_indices.R
-d1ef181cb2fa9d06cd33b3fb6be49b80 *tests/testthat/test-t24_s2_rgb.R
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+7c471b9e88d0bf12beb7d2fc1c785923 *tests/testthat/test-t23_s2_indices.R
+951b712e1dd8ec7bf7228a6bbf24dcb2 *tests/testthat/test-t24_s2_rgb.R
 3eb72c4d51fb9bcd0d3096c47fac39f9 *tests/testthat/test-t30_create_s2_dop.R
 31285fd860f0b5989c75b3a4fbaa901e *tests/testthat/test-t31_abs2rel.R
 ea3db7a710245a5fa8ddcd1083cef041 *tests/testthat/test-t32_list_indices.R
 8b11624265999d8fb27beaebcaaa7972 *tests/testthat/test-t33_sen2r_getElements.R
-9978093f13d9db27a926dc2caaf47c93 *tests/testthat/test-t34_st_crs2.R
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 2edade6adb54a5663b7ef5c029564688 *tests/testthat/test-t35_create_indices_db.R
 eb24bb106ea1df62033d443a1a00650b *tests/testthat/test-t36_mountpoint.R
 1e552a916cfae29e87385c61ebe54a67 *tests/testthat/test-t37_projpar.R
 2bfc5e6fda8a5858e143fb2a27cf2db9 *vignettes/docker.Rmd
-972338f93602fa1e9b08a14c0c745c01 *vignettes/installation.Rmd
+21eee9f333779df96915c307f3c5ab55 *vignettes/installation.Rmd
+0067f086ab0784c67694225f465dd293 *vignettes/outstructure.Rmd
+e2cfa3d18d33ba93661ef1dd229fe0bd *vignettes/sen2r_cmd.Rmd
+a5642366c8526ae421a948d01238e853 *vignettes/sen2r_gui.Rmd

NAMESPACE

@@ -276,4 +276,6 @@ importFrom(utils,getFromNamespace)
 importFrom(utils,head)
 importFrom(utils,packageVersion)
 importFrom(utils,read.table)
+importFrom(utils,setTxtProgressBar)
+importFrom(utils,txtProgressBar)
 importFrom(utils,unzip)

NEWS.md

@@ -1,3 +1,24 @@
+# Version 1.3.1
+
+## Major changes
+- Documentation was improved with three new vignettes about GUI usage, command line usage and output structure.
+
+## Bug fixes
+- Restore checking environmental variable in `init_python()` (this urgent bug fixing was the reason of the urgent release of the current version).
+- Fix building offline footprint.
+- Fix the Dockerfile.
+
+## Changes in default argument values
+- Accept both `sen2r(..., rm_safe = "yes"`) and `"all"`.
+- In the GUI, the maximum allowed cloud cover was set to 100% accordingly to the `sen2r()` defaults.
+
+## Minor changes
+- Add check on `max_mask` - `mask_type` coherence (if `max_mask < 100` and `mask_type` is not specified, a warning is returned).
+- Suppress some useless warnings.
+- Switch examples on 2019 dates (previously examples were based on 2017 images, which were partially moved on LTA).
+- Do not print progress bars in logs.
+
+
 # Version 1.3.0
 
 ## Major changes

R/build_example_param_file.R

@@ -56,7 +56,7 @@ build_example_param_file <- function(
         "step_atmcorr" = "l2a",
         "sen2cor_use_dem" = NA,
         "sen2cor_gipp" = NA,
-        "timewindow" = c("2017-07-03", "2017-07-03"),
+        "timewindow" = c("2019-07-23", "2019-07-23"),
         "timeperiod" = "full",
         "extent" = system.file("extdata/vector/barbellino.geojson", package = "sen2r"),
         "s2tiles_selected" = NA,
@@ -70,7 +70,7 @@ build_example_param_file <- function(
         ),
         "index_source" = "BOA",
         "mask_type" = NA,
-        "max_mask" = 80,
+        "max_mask" = 100,
         "mask_smooth" = 0,
         "mask_buffer" = 0,
         "clip_on_extent" = TRUE,

R/check_gdal.R

@@ -340,7 +340,8 @@ check_gdal <- function(abort = TRUE, gdal_path = NULL, force = FALSE, full_scan
 
   print_message(
     type="message",
-    "GDAL version in use: ", as.character(gdal_version))
+    "GDAL version in use: ", as.character(gdal_version)
+  )
   return(invisible(TRUE))
 
 }