version 0.2.2

cran · Jun 28, 2021 · af4aa9a · af4aa9a
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: sparrpowR
 Title: Power Analysis to Detect Spatial Relative Risk Clusters
-Version: 0.2.1
-Date: 2021-03-15
+Version: 0.2.2
+Date: 2021-06-28
 Authors@R: 
     c(person(given = "Ian D.",
              family = "Buller",
@@ -34,7 +34,6 @@ Description: Calculate the statistical power to detect clusters using kernel-bas
         be found in J. F. Bithell (1991) <doi:10.1002/sim.4780101112>.
 License: Apache License (>= 2.0)
 Encoding: UTF-8
-LazyData: true
 RoxygenNote: 7.1.1
 Depends: R (>= 3.5.0), spatstat.geom, spatstat.core, spatstat.linnet,
         spatstat (>= 2.0-0)
@@ -46,11 +45,11 @@ Language: en-US
 URL: https://github.com/machiela-lab/sparrpowR
 BugReports: https://github.com/machiela-lab/sparrpowR/issues
 NeedsCompilation: no
-Packaged: 2021-03-16 01:44:19 UTC; bullerid
+Packaged: 2021-06-28 13:05:20 UTC; bullerid
 Author: Ian D. Buller [aut, cre, cph] (<https://orcid.org/0000-0001-9477-8582>),
   Derek W. Brown [aut, cph] (<https://orcid.org/0000-0001-8393-1713>),
   Mitchell J. Machiela [ctb] (<https://orcid.org/0000-0001-6538-9705>),
   Timothy A. Myers [ctb],
   NCI [cph, fnd]
 Repository: CRAN
-Date/Publication: 2021-03-16 09:50:02 UTC
+Date/Publication: 2021-06-28 13:30:02 UTC
diff --git a/MD5 b/MD5
@@ -1,6 +1,6 @@
-f9e9e3e4d8f854e1614dfebeb7814952 *DESCRIPTION
+a5f576c27959cd2c60b2658e70aa996e *DESCRIPTION
 fe71f3765d1f1d6c3f4c31cba0203790 *NAMESPACE
-7751f5dc39ff0ee3f7df7d5966db6028 *NEWS.md
+b16c87c5d5d3233d042a517862f1db82 *NEWS.md
 f4bbfea1c535c9a87632199c12e1da8a *R/globals.R
 bbbc54a621fa093a4c56bd08fe3079c0 *R/jitter_power.R
 099022fcce8e774be9ca41e1e390aaf3 *R/package.R
@@ -11,9 +11,10 @@ ca99f454ac03a9e28c4b89801eae2005 *R/spatial_power.R
 0437c204f4beddb97c3935bf16ff399f *R/utils.R
 7c3d9c1a0bed7dd867122eedcaba2ecb *R/zzz.R
 175441a235a7615722681b3a65599f8b *README.md
-6352ab387fcaabb37f42df768bad8de0 *build/partial.rdb
+354e7128c23007c2335311e75e16d27c *build/partial.rdb
 81b2c1cc3b02cf40afd7861c15855cbb *build/vignette.rds
-47447b802f98c5f04a68470f275d419f *inst/doc/vignette.html
+58b3810baff94976fbabfeda07259517 *inst/CITATION
+63f8b1c69a0a806ebee0fc6dc955755f *inst/doc/vignette.html
 6f79a812c742950b89e776dd413f9b81 *inst/doc/vignette.html.asis
 65fde25e5ca22cb95b18cd10798dca2d *man/figures/sparrpowR.png
 d625f427c752c31dbb6022b3b93ccd7e *man/figures/spatial_plots1.png
@@ -22,17 +23,17 @@ d88d2d39b836bc8a2701eee2e3cb039b *man/figures/spatial_plots3.png
 785f53725386f6a5b3955f8ccfe2e896 *man/figures/spatial_plots4.png
 8a713ded6eb53b4ea8473a4fef8687b5 *man/figures/spatial_plots5.png
 f3fedaaad67e4750ca1f46da79a9d448 *man/figures/spatial_plots6.png
-a126f77b28764f777269b18ccd189c77 *man/jitter_power.Rd
+8f6ebded9cf69ccc7a7b435a0e6ec328 *man/jitter_power.Rd
 3e7a3eb4e61b8cca35b72d42b1b81357 *man/pval_correct.Rd
 51a48c0a953f6fba5a2510b6995c490a *man/sparrpowR-package.Rd
 d5a92a4791a93f08dd369ef778801e59 *man/spatial_data.Rd
 7451a530216af7ce79122431437c449b *man/spatial_plots.Rd
-e4533710e1eb6cc4624c54bc45b145e0 *man/spatial_power.Rd
+df8c009c180445e8679ac358464a4da9 *man/spatial_power.Rd
 0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
 0ee18a57299658c9a062ae1d95a5ba6f *tests/testthat.R
 10698d65c75d4f23b1316a68dc8feb8a *tests/testthat/test-jitter_power.R
 09d7ad2f66e758676a938ad5e805ffcd *tests/testthat/test-test-spatial_data.R
 c9d60cf0d54dfedd221272af9e5fa5ae *tests/testthat/test-test-spatial_plots.R
 3fff3301d5912f35b4c61f37fd9a6005 *tests/testthat/test-test-spatial_power.R
-5c7b5d7918ea6f82eb356188bcca060d *vignettes/vignette.Rmd
+430ecfc5a3fd434036dc77d673be8651 *vignettes/vignette.Rmd
 6f79a812c742950b89e776dd413f9b81 *vignettes/vignette.html.asis
diff --git a/NEWS.md b/NEWS.md
@@ -1,5 +1,11 @@
 # sparrpowR (development version)
 
+# sparrpowR 0.2.2
+  * Removed `LazyData: true` from 'DESCRIPTION' file because the package has no data accessed via a `data()` command and has no `data/` directory (in response to CRAN NOTE: 'LazyData' is specified without a 'data' directory)
+  * Changed hyperlink for Stamen basemap in 'vignette' file with a Hypertext Transfer Protocol Secure destination
+  * Added 'CITATION' file
+  * Deprecation badges in 'jitter_power.Rd' and 'spatial_power.Rd' files now hyperlink to `lifecycle` r-lib.org site
+
 # sparrpowR 0.2.1
 * Updated vignette with appropriate hyperlinks
 

diff --git a/build/partial.rdb b/build/partial.rdb
diff --git a/inst/CITATION b/inst/CITATION
@@ -0,0 +1,24 @@
+citHeader("To cite sparrpowR in publications use:")
+
+citEntry(entry = "Article",
+  title        = "{sparrpowR}: a flexible {R} package to estimate statistical power to identify spatial clustering of two groups and its application",
+  author       = personList(as.person("I. D. Buller"),
+                   as.person("D. W. Brown"),
+                   as.person("T. A. Myers"),
+                   as.person("R. R. Jones"),
+                   as.person("M. J. Machiela")),
+  journal      = "International Journal of Health Geographics",
+  year         = "2021",
+  volume       = "20",
+  number       = "1",
+  pages        = "1--7",
+  doi          = "10.1186/s12942-021-00267-z",
+  url          = "https://ij-healthgeographics.biomedcentral.com/articles/10.1186/s12942-021-00267-z",
+  publisher    = "BioMed Central",
+
+  textVersion  =
+  paste("I. D. Buller, D. W. Brown (co-first), T. A. Myers, R. R. Jones, M. J. Machiela (2021).",
+        "sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application.",
+        "International Journal of Health Geographics 20(1), 1-7.",
+        "DOI 10.1186/s12942-021-00267-z.")
+)
diff --git a/inst/doc/vignette.html b/inst/doc/vignette.html
diff --git a/man/jitter_power.Rd b/man/jitter_power.Rd
diff --git a/man/spatial_power.Rd b/man/spatial_power.Rd
diff --git a/vignettes/vignette.Rmd b/vignettes/vignette.Rmd
@@ -107,7 +107,7 @@ spatial_plots(input = sim_power, # use output of above simulation
               cols = cols) # colors of plot
 ```
 
-Now, lets overlay our results on top of a basemap. Here, we will use an open-source map from [Stamen](https://maps.stamen.com/#terrain/12/37.7706/-122.3782), that is unprojected in WGS84. We extract the rectangular box (i.e., bounding box) surrounding our polygon boundary of the District of Columbia (WGS84). 
+Now, lets overlay our results on top of a basemap. Here, we will use an open-source map from [Stamen](https://stamen.com/open-source/), that is unprojected in WGS84. We extract the rectangular box (i.e., bounding box) surrounding our polygon boundary of the District of Columbia (WGS84). 
 
 ```{r basemap}
 dcbb <- sf::st_bbox(sf::st_buffer(sf::st_as_sf(dc), dist = 0.015))