version 0.2.2

DESCRIPTION

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+Package: taxonomizr
+Maintainer: Scott Sherrill-Mix <shescott@upenn.edu>
+License: GPL-2
+Title: Functions to Work with NCBI Accessions and Taxonomy
+Type: Package
+LazyLoad: yes
+Author: Scott Sherrill-Mix [aut, cre]
+Authors@R: c(person("Scott", "Sherrill-Mix", role = c("aut", "cre"),
+                     email = "shescott@upenn.edu"))
+Description: Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.
+Version: 0.2.2
+Date: 2017-03-08
+Suggests: testthat, knitr, rmarkdown
+Depends: R (>= 3.0.0)
+Imports: parallel, RSQLite, data.table, R.utils
+RoxygenNote: 6.0.1
+VignetteBuilder: knitr
+NeedsCompilation: yes
+Packaged: 2017-03-08 16:28:47 UTC; scott
+Repository: CRAN
+Date/Publication: 2017-03-09 08:18:40

MD5

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+62dd06fd710dba97ee279a89409cfe15 *DESCRIPTION
+8a4caaee399dcb1fddde3a025e5eaee3 *NAMESPACE
+4279a71de096e8915427ddd6d2757ee4 *R/taxa.R
+04eb33dc0d5b6aa6be127051577023a6 *README.md
+e4a51d030e435d56ce75836fdd3220b2 *build/vignette.rds
+1b90cfd8fa1b486a6a28386d33ce3462 *inst/doc/usage.R
+3c856fee9facd38b1026ff18fa9dd777 *inst/doc/usage.Rmd
+537381f14ddaed8c165df096ddcba4cf *inst/doc/usage.html
+13d0bde45c8c16a6b9b98abc9bd1c2d2 *man/accessionToTaxa.Rd
+40a8f619bdae98f77d841e515dd3d58d *man/condenseTaxa.Rd
+f7296ef498ab1380d619d7cc636f0f6e *man/getAccession2taxid.Rd
+a85c107799e511b6bf26c3fe095ef63f *man/getId.Rd
+0fc65f288dcae4ac732a6217ebda16e9 *man/getNamesAndNodes.Rd
+98cfdf24259b07e79f880eadb733fbc5 *man/getTaxonomy.Rd
+8420a5306860a41886c0da14e1bf47b0 *man/lastNotNa.Rd
+91ce383d20e7daf897a44193c6f261a3 *man/read.accession2taxid.Rd
+12f35e0ff0f0fbf8ccbf0fd7f94bf323 *man/read.names.Rd
+ecdcd5b39012aa4458a4b3eb6a189833 *man/read.nodes.Rd
+4de9fac0202c014e1267084e38a5766c *man/streamingRead.Rd
+14137ee1cf1eddd029976d0ea3901333 *man/trimTaxa.Rd
+a7ed2d70251d676a986945f19b456602 *src/taxaTrim.c
+b7d3c5c239cb16ad1d8e4c68f43e5d09 *src/taxaTrim.h
+1b509a76cc18244a3847a2ab27ab9f77 *src/taxonomizr-init.c
+09570ff5fc4fe1c8f81b47295a3faafb *tests/testthat.R
+822e81b3c55ffe8f62e66e6e92e410f6 *tests/testthat/fakeNamesNodes.tar.gz
+887945d7d4ac31cba8105fffe13fa730 *tests/testthat/test_taxa.R
+3c856fee9facd38b1026ff18fa9dd777 *vignettes/usage.Rmd

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+
+export(accessionToTaxa)
+export(condenseTaxa)
+export(getAccession2taxid)
+export(getId)
+export(getNamesAndNodes)
+export(getTaxonomy)
+export(lastNotNa)
+export(read.accession2taxid)
+export(read.names)
+export(read.nodes)
+export(streamingRead)
+import(data.table)
+useDynLib(taxonomizr, .registration=TRUE)