version 0.1.4

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: text.alignment
 Type: Package
 Title: Text Alignment with Smith-Waterman
-Version: 0.1.3
+Version: 0.1.4
 Authors@R: c(
     person('Jan', 'Wijffels', role = c('aut', 'cre', 'cph'), email = 'jwijffels@bnosac.be', comment = "Rewrite of functionalities from the textreuse R package"), 
     person('Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital Humanities', role = 'cph'),
@@ -19,11 +19,11 @@ RoxygenNote: 7.1.2
 Suggests: knitr, markdown
 VignetteBuilder: knitr
 NeedsCompilation: yes
-Packaged: 2022-08-17 08:44:52 UTC; jwijffels
+Packaged: 2023-09-14 08:04:13 UTC; jwijf
 Author: Jan Wijffels [aut, cre, cph] (Rewrite of functionalities from the
     textreuse R package),
   Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital
     Humanities [cph],
   Lincoln Mullen [ctb, cph]
 Repository: CRAN
-Date/Publication: 2022-08-17 10:50:02 UTC
+Date/Publication: 2023-09-14 11:50:03 UTC

LICENSE

@@ -1,2 +1,2 @@
-YEAR: 2020
-COPYRIGHT HOLDER: Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital Humanities; Jan Wijffels; Lincoln Mullen
+YEAR: 2020
+COPYRIGHT HOLDER: Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital Humanities; Jan Wijffels; Lincoln Mullen

MD5

@@ -1,24 +1,24 @@
-292fa11637261b898a4af22cc1a185b1 *DESCRIPTION
-0ee61c8f69bb289cddf08cbf2a4a29ce *LICENSE
-4537a6427f500a05fba7baa7a807ea7c *NAMESPACE
-a0071bc69bfce56edeb90753aea948bb *NEWS.md
-fb4362a4207f56ce6bf4734d93e1d84b *R/RcppExports.R
-56f8839c4943523bfe07516c40925cf1 *R/pkg.R
-e67f53bf06399e733247cf4bb749eba0 *R/smith_waterman.R
-653347a6de2a98a8dbb55bb9713ba444 *README.md
-113ebcc5cee67bde5cbbf8889efdac11 *build/vignette.rds
-e65dc43f6ffd9ea3ddf1234433feb18e *inst/doc/textalignment.R
-68236b1edef2856fbd2585e0babb05a7 *inst/doc/textalignment.Rmd
-404acfa369e647e10f4819027c339453 *inst/doc/textalignment.html
-f7c3c2b77e2102bfcaf040b51a687e91 *inst/extdata/example1.txt
-fcad4facab1091f5e5b1eddf98f74b0f *inst/extdata/example2.txt
-33a1872c87ad3bf31159eb64c3b2a8f5 *man/smith_waterman.Rd
-d00e58bb29a1704b6856bddf1ab3f55d *man/smith_waterman_misaligned.Rd
-34f95147e964fab4e7529a925e604f97 *man/smith_waterman_pairwise.Rd
-00ba8163d554a2f99bf9920d4e12c89c *man/tokenize_letters.Rd
-79e10df4c0ed2fe117024812f4ff8ec3 *man/tokenize_spaces_punct.Rd
-130494f73109e14b1f1d1c73c0530d9d *src/Makevars
+6b3f97c5603b1aa9862783dab2d9524c *DESCRIPTION
+3f3c8f7ad326545bc44b2519ebdc69c8 *LICENSE
+a405330fbd96710d7f4ca1a5c94643e0 *NAMESPACE
+af945a5c6dce063ed9965e63b81ce6ef *NEWS.md
+926a77c3f671f98a1fb7dc39c08b355e *R/RcppExports.R
+35e94f0017bf8bdd0527ead148fe5b6c *R/pkg.R
+e3490c790cf6a770ad10c96eac09d7a5 *R/smith_waterman.R
+529aa9df18c640dc8b03d77d31854e79 *README.md
+4ecea6efc296cda6d0df1e6d06012dc8 *build/vignette.rds
+041fe4e1f8e918ae2d313fda104ba0dc *inst/doc/textalignment.R
+e6cd63b5d9e60cfe031bc6b745da467d *inst/doc/textalignment.Rmd
+9a03f6c07fc85a98d6119f965ab49bee *inst/doc/textalignment.html
+d035c281779877bdb73c85a8bf656549 *inst/extdata/example1.txt
+3b5f602262c140968e0dbd603434e557 *inst/extdata/example2.txt
+831247b1ad0743c64db1cb0ea9ae1144 *man/smith_waterman.Rd
+e478eb25dd2c7ffa81470559878a1c7f *man/smith_waterman_misaligned.Rd
+7900da0cd871397da7b7ba7566cb5241 *man/smith_waterman_pairwise.Rd
+d6fcf5a0aed6f66e33d3f15b5f654e22 *man/tokenize_letters.Rd
+33346d61c4109c82d6c96f7254fca082 *man/tokenize_spaces_punct.Rd
+c287f498493cb7ddffc71aeaedfc0dc0 *src/Makevars
 d5aa523da6b6eb2cc8d22e6aa924f4e5 *src/RcppExports.cpp
 b9815eef539418c828b8fc7f11378729 *src/smith_waterman_matrix.cpp
 fd9958a166671c962b431b35ba948396 *vignettes/logo.png
-68236b1edef2856fbd2585e0babb05a7 *vignettes/textalignment.Rmd
+e6cd63b5d9e60cfe031bc6b745da467d *vignettes/textalignment.Rmd

NAMESPACE

@@ -1,11 +1,11 @@
-# Generated by roxygen2: do not edit by hand
-
-S3method(as.data.frame,smith_waterman)
-S3method(print,smith_waterman)
-export(smith_waterman)
-export(smith_waterman_misaligned)
-export(smith_waterman_pairwise)
-export(tokenize_letters)
-export(tokenize_spaces_punct)
-importFrom(Rcpp,evalCpp)
-useDynLib(text.alignment)
+# Generated by roxygen2: do not edit by hand
+
+S3method(as.data.frame,smith_waterman)
+S3method(print,smith_waterman)
+export(smith_waterman)
+export(smith_waterman_misaligned)
+export(smith_waterman_pairwise)
+export(tokenize_letters)
+export(tokenize_spaces_punct)
+importFrom(Rcpp,evalCpp)
+useDynLib(text.alignment)

NEWS.md

@@ -1,18 +1,22 @@
-### CHANGES IN text.alignment VERSION 0.1.3
-
-- Change of maintainer email address
-
-### CHANGES IN text.alignment VERSION 0.1.2
-
-- Added smith_waterman_misaligned to extract the information of what is misaligned
-- Allow to pass arguments to the tokenizer
-
-### CHANGES IN text.alignment VERSION 0.1.1
-
-- Fix mismatch between R and Rcpp version of smith_waterman in case of an alignment with 1 letter/word only
-- Also return similarity score to a and b individually instead of only to the shortest string. These 2 measurements are now also returned by as.data.frame.smith_waterman
-- Added smith_waterman_pairwise
-
-### CHANGES IN text.alignment VERSION 0.1.0
-
-- Initial version
+### CHANGES IN text.alignment VERSION 0.1.4
+
+- Drop C++11 specification in Makevars
+
+### CHANGES IN text.alignment VERSION 0.1.3
+
+- Change of maintainer email address
+
+### CHANGES IN text.alignment VERSION 0.1.2
+
+- Added smith_waterman_misaligned to extract the information of what is misaligned
+- Allow to pass arguments to the tokenizer
+
+### CHANGES IN text.alignment VERSION 0.1.1
+
+- Fix mismatch between R and Rcpp version of smith_waterman in case of an alignment with 1 letter/word only
+- Also return similarity score to a and b individually instead of only to the shortest string. These 2 measurements are now also returned by as.data.frame.smith_waterman
+- Added smith_waterman_pairwise
+
+### CHANGES IN text.alignment VERSION 0.1.0
+
+- Initial version

R/RcppExports.R

@@ -1,27 +1,27 @@
-# Generated by using Rcpp::compileAttributes() -> do not edit by hand
-# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
-
-smith_waterman_mark_chars <- function(text, edit_mark) {
-    .Call('_text_alignment_smith_waterman_mark_chars', PACKAGE = 'text.alignment', text, edit_mark)
-}
-
-lowercase <- function(data) {
-    .Call('_text_alignment_lowercase', PACKAGE = 'text.alignment', data)
-}
-
-smith_waterman_matrix <- function(a, b, score_match, score_gap, score_mismatch, x) {
-    .Call('_text_alignment_smith_waterman_matrix', PACKAGE = 'text.alignment', a, b, score_match, score_gap, score_mismatch, x)
-}
-
-smith_waterman_function <- function(a, b, score_gap, similarity) {
-    .Call('_text_alignment_smith_waterman_function', PACKAGE = 'text.alignment', a, b, score_gap, similarity)
-}
-
-smith_waterman_path <- function(m, original_a, original_b, row_i, col_i, edit_mark) {
-    .Call('_text_alignment_smith_waterman_path', PACKAGE = 'text.alignment', m, original_a, original_b, row_i, col_i, edit_mark)
-}
-
-smith_waterman_path_integer <- function(m, original_a, original_b, row_i, col_i, edit_mark) {
-    .Call('_text_alignment_smith_waterman_path_integer', PACKAGE = 'text.alignment', m, original_a, original_b, row_i, col_i, edit_mark)
-}
-
+# Generated by using Rcpp::compileAttributes() -> do not edit by hand
+# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
+
+smith_waterman_mark_chars <- function(text, edit_mark) {
+    .Call('_text_alignment_smith_waterman_mark_chars', PACKAGE = 'text.alignment', text, edit_mark)
+}
+
+lowercase <- function(data) {
+    .Call('_text_alignment_lowercase', PACKAGE = 'text.alignment', data)
+}
+
+smith_waterman_matrix <- function(a, b, score_match, score_gap, score_mismatch, x) {
+    .Call('_text_alignment_smith_waterman_matrix', PACKAGE = 'text.alignment', a, b, score_match, score_gap, score_mismatch, x)
+}
+
+smith_waterman_function <- function(a, b, score_gap, similarity) {
+    .Call('_text_alignment_smith_waterman_function', PACKAGE = 'text.alignment', a, b, score_gap, similarity)
+}
+
+smith_waterman_path <- function(m, original_a, original_b, row_i, col_i, edit_mark) {
+    .Call('_text_alignment_smith_waterman_path', PACKAGE = 'text.alignment', m, original_a, original_b, row_i, col_i, edit_mark)
+}
+
+smith_waterman_path_integer <- function(m, original_a, original_b, row_i, col_i, edit_mark) {
+    .Call('_text_alignment_smith_waterman_path_integer', PACKAGE = 'text.alignment', m, original_a, original_b, row_i, col_i, edit_mark)
+}
+

R/pkg.R

@@ -1,5 +1,5 @@
-#' @importFrom Rcpp evalCpp
-#' @useDynLib text.alignment
-NULL
-
-
+#' @importFrom Rcpp evalCpp
+#' @useDynLib text.alignment
+NULL
+
+