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| Package: track2KBA | ||
| Title: Identifying Important Areas from Animal Tracking Data | ||
| Version: 1.0.0 | ||
| Authors@R: c( | ||
| person("Martin", "Beal", email = "martinbeal88@gmail.com", role = "cre", comment = c(ORCID = "0000-0003-1654-1410")), | ||
| person("Steffen", "Oppel", email = "steffen.oppel@gmail.com", role = "aut", comment = c(ORCID = "0000-0003-1654-1410")), | ||
| person("Maria", "Dias", email = "maria.dias@birdlife.org", role = "aut", comment = c(ORCID = "0000-0002-7281-4391")), | ||
| person("Mark", "Miller", email = "mark.gr.miller@gmail.com", role = "ctb"), | ||
| person("Phillip", "Taylor",email = "philiprhodritaylor@googlemail.com", role = "ctb"), | ||
| person("Virginia", "Morera-Pujol", email = "morera.virginia@gmail.com ", role = "ctb", comment = c(ORCID = "0000-0001-6500-5548")), | ||
| person("Elizabeth", "Pearmain", email = "lizzie.pearmain@birdlife.org", role = "ctb", comment = c(ORCID = "0000-0002-6600-1482")), | ||
| person("Jonathan", "Handley", email = "Jonathan.Handley@birdlife.org", role = "ctb", comment = c(ORCID = "0000-0001-6468-338X")), | ||
| person("Ben", "Lascelles", email = "benlasc@gmail.com", role = "ctb")) | ||
| URL: https://github.com/BirdLifeInternational/track2kba | ||
| Description: Functions for preparing and analyzing animal tracking data, | ||
| with the intention of identifying areas which are potentially important at | ||
| the population level and therefore of conservation interest. Areas identified | ||
| using this package may be checked against global or regionally-defined criteria, | ||
| such as those set by the Key Biodiversity Area program. The method | ||
| published herein is an optimized and updated version of the method described in Lascelles | ||
| et al. 2016 <doi:10.1111/ddi.12411>. | ||
| Depends: R (>= 2.10) | ||
| License: LGPL-3 | ||
| Encoding: UTF-8 | ||
| LazyData: true | ||
| RoxygenNote: 7.1.1 | ||
| BugReports: https://github.com/BirdLifeInternational/track2kba/issues | ||
| Suggests: adehabitatLT, doParallel, knitr, maps, Matching, move, | ||
| parallel, rmarkdown, tinytest | ||
| VignetteBuilder: knitr | ||
| Imports: adehabitatHR, dplyr, foreach, geosphere, ggplot2, lubridate, | ||
| magrittr, maptools, methods, purrr, raster, rgeos, rgdal (>= | ||
| 1.5-0), rlang, sf (>= 0.7-4), sp (>= 1.4-1), tidyr | ||
| NeedsCompilation: no | ||
| Packaged: 2021-08-04 08:30:19 UTC; Martim Bill | ||
| Author: Martin Beal [cre] (<https://orcid.org/0000-0003-1654-1410>), | ||
| Steffen Oppel [aut] (<https://orcid.org/0000-0003-1654-1410>), | ||
| Maria Dias [aut] (<https://orcid.org/0000-0002-7281-4391>), | ||
| Mark Miller [ctb], | ||
| Phillip Taylor [ctb], | ||
| Virginia Morera-Pujol [ctb] (<https://orcid.org/0000-0001-6500-5548>), | ||
| Elizabeth Pearmain [ctb] (<https://orcid.org/0000-0002-6600-1482>), | ||
| Jonathan Handley [ctb] (<https://orcid.org/0000-0001-6468-338X>), | ||
| Ben Lascelles [ctb] | ||
| Maintainer: Martin Beal <martinbeal88@gmail.com> | ||
| Repository: CRAN | ||
| Date/Publication: 2021-08-05 07:50:01 UTC |
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| c46857012fe6921c6db8ed4fbda6aea8 *DESCRIPTION | ||
| e17809e2754787d9009a2b5b3372ffbb *NAMESPACE | ||
| d82db248e121925e22b037f7b8c336d3 *NEWS.md | ||
| 0b4d9d7755a78f0b39bcb5392a596401 *R/data.R | ||
| ab012c486074aba8d04797c85309d4c8 *R/estSpaceUse.r | ||
| 9567d3e56e17ddfb7b500d62b0131a98 *R/findScale.R | ||
| 0b1e6dda6c2b34ad0e35326af3a44290 *R/findSite.R | ||
| 634f7dfde76b4a888af6058b5787ea46 *R/formatFields.R | ||
| ba6b7b9dfde60c819edc21a2a0e1d020 *R/indEffectTest.R | ||
| 23ba043ce4205dc3887cfa2825065d1d *R/mapKDE.R | ||
| 4f94f9c52a65bd77ff2a25c1b074a697 *R/mapSite.R | ||
| df17739628efa1556aeb7870d9f3b08d *R/mapTrips.R | ||
| 2d3d8cb67283eafc41ac9bec26500bd4 *R/move2KBA.r | ||
| 9f8593eacae6a6a82c85942e09f9c01b *R/projectTracks.R | ||
| 3f5f4953d8a6f7fbefd6510547a7335a *R/repAssess.r | ||
| 6c7aaae5a1bc73078e015af4e88268d8 *R/tripSplit.r | ||
| 27498d41c37adff06f4c6a15f25c9fbd *R/tripSummary.r | ||
| e5618e64bdb24f9122e6f7280352d651 *README.md | ||
| 4602b9b161e6b7fc2f788a283f713486 *build/vignette.rds | ||
| 6aa6e7e87ffbef6b951ff18d494cd295 *data/boobies.rda | ||
| 621677aa1dd7f1e23280e18e9dc99611 *inst/doc/track2kba_workflow.R | ||
| 2c607f035bcd97147ae4a55df5c78ed4 *inst/doc/track2kba_workflow.Rmd | ||
| 42c4efa857473900a370cce8ef2a42fa *inst/doc/track2kba_workflow.html | ||
| 6456da43b40fbc0072f215c4c59dd47f *inst/tinytest/boobies_testdata.csv | ||
| 3a641a98f789ced53371662e8fb83095 *inst/tinytest/movebank_testdata.csv | ||
| 119201b5b1af463897f88d800496258f *inst/tinytest/test_estSpaceUse.R | ||
| 56c9ba2b979e08c74052228f9e02badf *inst/tinytest/test_findScale.R | ||
| c77f33d2cede669ce9522274b49893ca *inst/tinytest/test_findSite.R | ||
| 9b20f65b96509362dd3cfe80142db4c5 *inst/tinytest/test_formatFields.R | ||
| 50b4fb6e8fea1de6b3c8d0779eb3f15b *inst/tinytest/test_indEffectTest.R | ||
| 6f0c4c87a43499de0f6ead939814a0e5 *inst/tinytest/test_mapKDE.R | ||
| d2bcc0b64b8d9ff812e5cc5cc0409a68 *inst/tinytest/test_mapSite.R | ||
| 45f0f41b5ec68e7285f6c93d6c4f0570 *inst/tinytest/test_mapTrips.R | ||
| c2dea4214f2f56f4cef7f55cd0b0099f *inst/tinytest/test_move2KBA.R | ||
| 7e616d12d8bdd9576cb13d45899589db *inst/tinytest/test_projectTracks.R | ||
| 729a5dfeceb742e66eea7667332bd82a *inst/tinytest/test_repAssess.R | ||
| 5e073ad0c7043ca4df71a5d7bc31c04f *inst/tinytest/test_tripSplit.R | ||
| 50994fd3d2fd870b35ab4bb47c7b7c71 *inst/tinytest/test_tripSummary.R | ||
| 94026775a733d058d17d20f788cc52a1 *man/boobies.Rd | ||
| c0e9741aa986d789d90538626267ae51 *man/estSpaceUse.Rd | ||
| c2d3fd4403b3fd2888df52181ff194db *man/figures/KBA_sp_plot.png | ||
| ec999a2da8b41eb76aedaafba10fee5c *man/figures/estSpaceUse-1.png | ||
| c44395cf03534ac7a36d15954ca1f96b *man/figures/findScale-1.png | ||
| a0089c638427bf6e500fbf540dd9c7a3 *man/figures/logo.png | ||
| 5eaaa0d51bca3db52c7a69117bd21f55 *man/figures/plot_KBA_sf.png | ||
| bf7a5d90d020baf91712aba59960d8f8 *man/figures/repAssess-1.png | ||
| 96c8090440db043fc6ec40e557b19e69 *man/figures/tripSplit-chunk-3-1.png | ||
| b454598cf37e2eada7bd9d3da1920220 *man/findScale.Rd | ||
| da6799a82acf8d55f0b56aeed8da77cb *man/findSite.Rd | ||
| bd34091a71c6da3da369a49d264535c2 *man/formatFields.Rd | ||
| 2f96c64f00841c28e8e76554f3a04350 *man/indEffectTest.Rd | ||
| b7347953469348e572ec48fdca79d171 *man/mapKDE.Rd | ||
| 4f4c611acae201187323d31ee9c02a2f *man/mapSite.Rd | ||
| dcc9da9d8d4d9f974a9d623a6229c3d2 *man/mapTrips.Rd | ||
| 946dd91281defa2ee7e3b6ae8afc646d *man/move2KBA.Rd | ||
| c5b88117c9715447561b70e221a0a70c *man/projectTracks.Rd | ||
| 964575c7fdc9020328f2da5af2ef5755 *man/repAssess.Rd | ||
| 71fe2c5d7973bbb7f5f94a3f5c934667 *man/tripSplit.Rd | ||
| 0e102f9ca9b249f39c811a66f026d62b *man/tripSummary.Rd | ||
| 6c302f002a6474c927f8e9c6d051b640 *tests/tinytest.R | ||
| c2d3fd4403b3fd2888df52181ff194db *vignettes/KBA_sp_plot.png | ||
| ec999a2da8b41eb76aedaafba10fee5c *vignettes/estSpaceUse-1.png | ||
| c44395cf03534ac7a36d15954ca1f96b *vignettes/findScale-1.png | ||
| 5eaaa0d51bca3db52c7a69117bd21f55 *vignettes/plot_KBA_sf.png | ||
| bf7a5d90d020baf91712aba59960d8f8 *vignettes/repAssess-1.png | ||
| 2c607f035bcd97147ae4a55df5c78ed4 *vignettes/track2kba_workflow.Rmd | ||
| 96c8090440db043fc6ec40e557b19e69 *vignettes/tripSplit-chunk-3-1.png |
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| # Generated by roxygen2: do not edit by hand | ||
|
|
||
| export(estSpaceUse) | ||
| export(findScale) | ||
| export(findSite) | ||
| export(formatFields) | ||
| export(indEffectTest) | ||
| export(mapKDE) | ||
| export(mapSite) | ||
| export(mapTrips) | ||
| export(move2KBA) | ||
| export(projectTracks) | ||
| export(repAssess) | ||
| export(tripSplit) | ||
| export(tripSummary) | ||
| import(dplyr) | ||
| import(sp) | ||
| importFrom(adehabitatHR,estUDm2spixdf) | ||
| importFrom(adehabitatHR,getverticeshr) | ||
| importFrom(adehabitatHR,kernelUD) | ||
| importFrom(dplyr,arrange) | ||
| importFrom(dplyr,desc) | ||
| importFrom(dplyr,filter) | ||
| importFrom(dplyr,first) | ||
| importFrom(dplyr,group_by) | ||
| importFrom(dplyr,if_else) | ||
| importFrom(dplyr,last) | ||
| importFrom(dplyr,left_join) | ||
| importFrom(dplyr,mutate) | ||
| importFrom(dplyr,n_distinct) | ||
| importFrom(dplyr,rename) | ||
| importFrom(dplyr,select) | ||
| importFrom(dplyr,ungroup) | ||
| importFrom(foreach,"%dopar%") | ||
| importFrom(geosphere,centroid) | ||
| importFrom(ggplot2,aes) | ||
| importFrom(ggplot2,aes_string) | ||
| importFrom(ggplot2,borders) | ||
| importFrom(ggplot2,coord_sf) | ||
| importFrom(ggplot2,element_blank) | ||
| importFrom(ggplot2,element_line) | ||
| importFrom(ggplot2,element_rect) | ||
| importFrom(ggplot2,facet_wrap) | ||
| importFrom(ggplot2,geom_boxplot) | ||
| importFrom(ggplot2,geom_path) | ||
| importFrom(ggplot2,geom_point) | ||
| importFrom(ggplot2,geom_sf) | ||
| importFrom(ggplot2,ggplot) | ||
| importFrom(ggplot2,guides) | ||
| importFrom(ggplot2,labs) | ||
| importFrom(ggplot2,scale_colour_continuous) | ||
| importFrom(ggplot2,scale_fill_continuous) | ||
| importFrom(ggplot2,scale_x_continuous) | ||
| importFrom(ggplot2,theme) | ||
| importFrom(ggplot2,vars) | ||
| importFrom(ggplot2,xlab) | ||
| importFrom(ggplot2,ylab) | ||
| importFrom(graphics,abline) | ||
| importFrom(graphics,identify) | ||
| importFrom(graphics,image) | ||
| importFrom(graphics,lines) | ||
| importFrom(graphics,points) | ||
| importFrom(graphics,polygon) | ||
| importFrom(graphics,text) | ||
| importFrom(magrittr,"%>%") | ||
| importFrom(maptools,spRbind) | ||
| importFrom(methods,as) | ||
| importFrom(rlang,.data) | ||
| importFrom(sf,st_as_sf) | ||
| importFrom(sf,st_bbox) | ||
| importFrom(sf,st_transform) | ||
| importFrom(sf,st_union) | ||
| importFrom(sp,CRS) | ||
| importFrom(sp,SpatialPixels) | ||
| importFrom(sp,SpatialPoints) | ||
| importFrom(sp,SpatialPointsDataFrame) | ||
| importFrom(sp,coordinates) | ||
| importFrom(sp,proj4string) | ||
| importFrom(sp,spDistsN1) | ||
| importFrom(sp,spTransform) | ||
| importFrom(stats,median) | ||
| importFrom(stats,na.omit) | ||
| importFrom(stats,quantile) | ||
| importFrom(stats,sd) | ||
| importFrom(stats,setNames) | ||
| importFrom(stats,var) | ||
| importFrom(tidyr,pivot_longer) | ||
| importFrom(tidyr,pivot_wider) |
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| # Version 1.0.0 | ||
|
|
||
| First release. |
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| #' St. Helena Masked Boobies | ||
| #' | ||
| #' A GPS tracking data set of Masked Boobies during incubation and chick-rearing | ||
| #' at St. Helena Island. Formatted following BirdLife International's Seabird | ||
| #' Tracking Database standard \url{http://www.seabirdtracking.org/}. | ||
| #' Data from Oppel et al. 2015. | ||
| #' | ||
| #' @format A data frame with 116355 obs. of 6 variables: | ||
| #' \describe{ | ||
| #' \item{track_id}{Unique identifier code for each bird} | ||
| #' \item{date_gmt}{Character vector representing date (Greenwich Mean Time)} | ||
| #' \item{time_gmt}{Character vector representing time (Greenwich Mean Time)} | ||
| #' \item{longitude}{Longitudinal position of bird} | ||
| #' \item{latitude}{Latitudinal position of bird} | ||
| #' \item{lon_colony}{Longitudinal position of breeding colony} | ||
| #' \item{lat_colony}{Latitudinal position of breeding colony} | ||
| #' ... | ||
| #' } | ||
| #' @source \url{https://link.springer.com/article/10.1007/s00265-015-1903-3} | ||
| "boobies" |
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