version 1.0.5

cran · Feb 13, 2023 · c792d99 · c792d99
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: track2KBA
 Title: Identifying Important Areas from Animal Tracking Data
-Version: 1.0.4
+Version: 1.0.5
 Authors@R: c(
     person("Martin", "Beal", email = "martinbeal88@gmail.com", role = c("aut","cre"), comment = c(ORCID = "0000-0003-1654-1410")),
     person("Steffen", "Oppel", email = "steffen.oppel@gmail.com", role = "aut", comment = c(ORCID = "0000-0003-1654-1410")),
@@ -32,7 +32,7 @@ Imports: adehabitatHR, dplyr, foreach, geosphere, ggplot2, lubridate,
         raster, rgdal (>= 1.5-0), rgeos, rlang, sf (>= 0.7-4), sp (>=
         1.4-1), tidyr
 NeedsCompilation: no
-Packaged: 2022-11-17 13:18:45 UTC; Martim Bill
+Packaged: 2023-02-13 17:06:41 UTC; Martim Bill
 Author: Martin Beal [aut, cre] (<https://orcid.org/0000-0003-1654-1410>),
   Steffen Oppel [aut] (<https://orcid.org/0000-0003-1654-1410>),
   Maria Dias [aut] (<https://orcid.org/0000-0002-7281-4391>),
@@ -44,4 +44,4 @@ Author: Martin Beal [aut, cre] (<https://orcid.org/0000-0003-1654-1410>),
   Ben Lascelles [ctb]
 Maintainer: Martin Beal <martinbeal88@gmail.com>
 Repository: CRAN
-Date/Publication: 2022-11-18 23:50:02 UTC
+Date/Publication: 2023-02-13 17:20:02 UTC
diff --git a/MD5 b/MD5
@@ -1,4 +1,4 @@
-3ce0cda54b4240a8db5f4a33cb9b225b *DESCRIPTION
+5f457e803be2f32db243b9155721ca8d *DESCRIPTION
 93e3b9916b77a848ae93ebc3c11542bd *NAMESPACE
 13c3503e59ce7e4c6b7926e22fe8d278 *NEWS.md
 5afb06434961b0be419fbe9735f7b859 *R/data.R
@@ -9,7 +9,7 @@ c7fb7f51684f13906193063f7b60fba2 *R/findScale.R
 f02218e46dce91e91031424a90ba5730 *R/indEffectTest.R
 cea8ef0eca382be9be924b9e981c307c *R/mapKDE.R
 4c5697fee9ec3f9fe8ef63b982d6ef7e *R/mapSite.R
-df17739628efa1556aeb7870d9f3b08d *R/mapTrips.R
+6c8e89a8eeea9eb5714a1f54c5d24eef *R/mapTrips.R
 7fea76ab1d809a59775d86ef93da0fc5 *R/move2KBA.r
 901d68fb8e9a1ef9ce3ee1ce8cce58ab *R/projectTracks.R
 02cd2377fe5221bfc8978e1d12273f27 *R/repAssess.r
@@ -19,7 +19,7 @@ df17739628efa1556aeb7870d9f3b08d *R/mapTrips.R
 afdd9cbb1410d4dbd426d5fbdfb41a40 *build/vignette.rds
 0ec0d3e2720c25cf1f2928f2c4771bbc *data/KDE_example.rda
 6aa6e7e87ffbef6b951ff18d494cd295 *data/boobies.rda
-31384b8205170d4954fb5c09392d600f *inst/CITATION
+cf35f026d198bc9b3c82c2561f4019e0 *inst/CITATION
 89ee74ee7a77e77fa2245026eb15b91c *inst/doc/track2kba_workflow.R
 73fe4d89e2bc1053dea10c14a4fe950a *inst/doc/track2kba_workflow.Rmd
 342697db9cab720f50bf15b9352db038 *inst/doc/track2kba_workflow.html
@@ -38,7 +38,8 @@ bae5bc2c51bc6b657b2de85f1a616ee6 *inst/tinytest/test_projectTracks.R
 bce1f937549a5392fadb9cb81510f1e4 *inst/tinytest/test_repAssess.R
 9c9a9994296b5488c70782dc9e5ec7ff *inst/tinytest/test_tripSplit.R
 ad21930ed5c2294441fdc5cfe5e13d94 *inst/tinytest/test_tripSummary.R
-6901a8f3a46cff4f1598be3fea816edc *man/KDE_example.Rd
+8ef1cfbd51cd57f94fa47443b536aa19 *man/IndEffectTest.Rd
+18922b9cc21b4411f760187bae23fc16 *man/KDE_example.Rd
 94026775a733d058d17d20f788cc52a1 *man/boobies.Rd
 132ba5033cee937c09b3eeee606c5a78 *man/estSpaceUse.Rd
 c2d3fd4403b3fd2888df52181ff194db *man/figures/KBA_sp_plot.png
@@ -49,11 +50,10 @@ c44395cf03534ac7a36d15954ca1f96b *man/figures/findScale-1.png
 bf7a5d90d020baf91712aba59960d8f8 *man/figures/repAssess-1.png
 96c8090440db043fc6ec40e557b19e69 *man/figures/tripSplit-chunk-3-1.png
 e0b380396639ffe11ecd6c6b73ddb2ae *man/findScale.Rd
-c51a0dee672082acef6d752f3797b77d *man/findSite.Rd
+5649755f8be158d3bd356d87452b61c4 *man/findSite.Rd
 bd34091a71c6da3da369a49d264535c2 *man/formatFields.Rd
-c144bb694e1693f4641dd5355cd1e593 *man/indEffectTest.Rd
 e5c66ef6047c99b737a9d968d0173899 *man/mapKDE.Rd
-7821abc97cc970fd04b5964408574dc5 *man/mapSite.Rd
+fdc4c8732ea0143cb5aae12b797ee745 *man/mapSite.Rd
 dcc9da9d8d4d9f974a9d623a6229c3d2 *man/mapTrips.Rd
 946dd91281defa2ee7e3b6ae8afc646d *man/move2KBA.Rd
 c5b88117c9715447561b70e221a0a70c *man/projectTracks.Rd

diff --git a/R/mapTrips.R b/R/mapTrips.R
@@ -29,7 +29,7 @@
 #' dataGroup <- data.frame(Longitude = rep(c(1:10, 10:1), 2), 
 #'                         Latitude =  rep(c(1:10, 10:1), 2),
 #'                         ID = c(rep("A", 20), rep("B", 20)),
-#'                         DateTime = as.character(
+#'                         DateTime = format(
 #'                         lubridate::ymd_hms("2021-01-01 00:00:00") +
 #'                         lubridate::hours(0:19))
 #' )
@@ -103,10 +103,10 @@ mapTrips <- function(trips, colony, IDs=NULL, colorBy = c("complete", "trip")) {
 
     plotdat %>%
       mutate(complete = ifelse(.data$Returns == "No", "No", "Yes"),
-             colID = as.character(
+             colID = format(
                x = factor(
                  x = .data$tripID,
-                 labels = seq_len(length.out = n_distinct(x = .data$tripID))
+                 labels = seq_len(length.out = n_distinct(.data$tripID))
                  ))) %>%
       arrange(.data$ID, .data$DateTime) -> forplot
 
@@ -134,9 +134,9 @@ mapTrips <- function(trips, colony, IDs=NULL, colorBy = c("complete", "trip")) {
       dplyr::arrange(.data$ID, .data$DateTime) %>%
       dplyr::group_by(.data$ID) %>%
       dplyr::mutate(complete = ifelse(.data$Returns == "No", "No", "Yes"),
-                    colID = as.character(x = factor(
+                    colID = format(x = factor(
         x = .data$tripID,
-        labels = seq_len(length.out = n_distinct(x = .data$tripID))
+        labels = seq_len(length.out = n_distinct(.data$tripID))
       ))) -> forplot
     TRACKPLOT <- ggplot(data = forplot,
                         aes_string(x = "Longitude", y = "Latitude",

diff --git a/inst/CITATION b/inst/CITATION
@@ -1,4 +1,4 @@
-citEntry(entry = "Article", 
+bibentry(bibtype = "Article", 
          author = c(person("Martin", "Beal"), person("Steffen", "Oppel"), person("Elizabeth J.", "Pearmain"), 
                     person("Virginia", "Morera-Pujol"), person("Ana P.B.", "Carneiro"),
                     person("Tammy E.", "Davies"), person("Richard A.", "Phillips"), person("Philip R.", "Taylor"), 
@@ -11,5 +11,5 @@ citEntry(entry = "Article",
          doi = "10.1111/2041-210X.13713",
          year = 2021,
          textVersion = 
-             "Beal, M., Oppel, S., Handley, J., Pearmain, E.J., Morera-Pujol, V., Carneiro, A.P.B., Davies, T.E., Phillips, R.A., Taylor, P.R., Miller, M.G.R., Franco, A.M.A., Catry, I., Patrício, A.R., Regalla, A., Staniland, I., Boyd, C., Catry, P., Dias, M.P., 2021. track2KBA: An R package for identifying important sites for biodiversity from tracking data. Methods in Ecology and Evolution n/a. https://doi.org/10.1111/2041-210X.13713"
+           "Beal, M., Oppel, S., Handley, J., Pearmain, E. J., Morera-Pujol, V., Carneiro, A. P. B., Davies, T. E., Phillips, R. A., Taylor, P. R., Miller, M. G. R., Franco, A. M. A., Catry, I., Patrício, A. R., Regalla, A., Staniland, I., Boyd, C., Catry, P., & Dias, M. P. (2021). track2KBA: An R package for identifying important sites for biodiversity from tracking data. Methods in Ecology and Evolution, 12(12), 2372–2378. https://doi.org/10.1111/2041-210X.13713"
 )
diff --git a/man/indEffectTest.Rd → man/IndEffectTest.Rd b/man/indEffectTest.Rd → man/IndEffectTest.Rd