Merge branch 'main' of github.com:cribbslab/TallyTriN

cribbslab · Jul 5, 2023 · c6ffb7d · c6ffb7d
2 parents 244313e + 4da3fa7
commit c6ffb7d
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Showing 4 changed files with 11 additions and 3 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
@@ -0,0 +1,10 @@
+
+version: 2
+
+build:
+    os: ubuntu-22.04
+    tools:
+        python: "3.11"
+
+sphinx:
+    configuration: docs/conf.py
diff --git a/readthedocs.yml b/readthedocs.yml
diff --git a/tallytrin/pipeline_10x.py b/tallytrin/pipeline_10x.py
@@ -308,7 +308,7 @@ def count(infile, outfile):
     unique method, per gene and per cell. The output is a compressed
     TSV file called "counts.tsv.gz".'''
 
-    statement = '''umi_tools count --method unique --per-gene --gene-tag=XT --per-cell  -I %(infile)s -S counts.tsv.gz'''
+    statement = '''umi_tools count --per-gene --gene-tag=XT --per-cell  -I %(infile)s -S counts.tsv.gz'''
 
     P.run(statement, job_options='-t 24:00:00')