"Dockerfile" builds the cryanking/temperature_container on docker hub (digest:sha256:39594b0a044d97bdf8114a7b4bf5567e8b2790808a7284fc7234acfd985e2ffb)
Data (if not included) is assumed to be in "ob_temp_working_data.csv" in the folder mounted as /research
The bland-altman style calculation is done by ba_analysis.R
- This largely follows https://pubmed.ncbi.nlm.nih.gov/32532218/
- outputs include
- agreement_output.csv with LOA calculations
- oral_ir_ba.jpg, drager_oral_ba.jpg, drager_ir_ba.jpg BA type plots
- pairwise_correlations.csv with raw correlations and bootstrap confidence limits
The Hypothermia incidence calculation is done by hypothermia_incidence.R
- outputs include
- smoothed_temp.csv with individual smoothed data using random slope spline models
- curve_with_ci.csv with the overall temperature trends
- main_outs.csv with the target quantity estimates and ci
- scatter_smoothering.jpg figure showing smoothing effect
- overlay_variation.jpeg figure showing sample of temporal changes
- hypothermia_indicators.csv individual level occurance of smoothed severe hypothermia
- table1.csv patient characteristics stratified by severe hypothermia outcome