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Update for 2022 workshop #3

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Jun 8, 2022
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Update for 2022 workshop #3

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Update links
mdpiper Jun 7, 2022
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mdpiper Jun 8, 2022
112b151
Import netcdf_file from scipy.io; netcdf namespace is deprecated
mdpiper Jun 8, 2022
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Add list of additional topics
mdpiper Jun 8, 2022
2e0d9bb
Add link to CSDMS Ivy course material
mdpiper Jun 8, 2022
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34 changes: 21 additions & 13 deletions README.md
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Expand Up @@ -2,7 +2,7 @@

This is a two-part (morning and afternoon) interactive workshop
on using the Python programming language in the geosciences
to perform data analysis and visualization.
to perform data ingest, analysis, and visualization.
The workshop is a part of the [RECCS][reccs] program at CU Boulder.

This workshop will not teach the details of Python--others have done this (see "Resources" below),
Expand All @@ -11,10 +11,9 @@ The goal of this workshop is to show how working geoscientists
use some of the plentiful scientific libraries available in Python.


## Instructors
## Instructor

* [Mark Piper](https://instaar.colorado.edu/people/mark-piper/)
* Jeffrey Schmidt


## Requirements
Expand All @@ -35,22 +34,21 @@ The morning session runs from 9 am until noon,
with a break around the midpoint.
It covers more basic concepts,
but people with experience using Python
can join and help those with less experience.
can help those with less experience.

*Topics:*

* Introductions
* Why Python?
* Logging in to the CSDMS JupyterHub
* Logging in to the OpenEarthscape JupyterHub
* Using Jupyter Notebook
* Python fundamentals
* Importing Python libraries
* Reading data from a csv file with *pandas*
* Plotting data with *matplotlib*
* Saving work to a PDF file
* Exercises and discussion

:arrow_forward: [Run the workshop material on the CSDMS JupyterHub][nbgitpuller-link]
:arrow_forward: [Run the workshop material on the OpenEarthscape JupyterHub][nbgitpuller-link]

### Afternoon

Expand All @@ -60,14 +58,24 @@ It covers more advanced topics.

*Topics:*

* Introductions
* Loops, conditionals, `try` statement, functions
* Reading data from a NetCDF file with *scipy*
* Analyzing and visualizing data with *Basemap* and *matplotlib*
* Saving work to a PDF file
* Exercises and discussion

:arrow_forward: [Run the workshop material on the CSDMS JupyterHub][nbgitpuller-link]
:arrow_forward: [Run the workshop material on the OpenEarthscape JupyterHub][nbgitpuller-link]

### Extra

Given time,
some additional topics that can be covered.

*Topics:*

* Saving work to a PDF file
* Using shell commands in a terminal
* Anaconda and *conda*
* Using Python modules


## Resources
Expand All @@ -78,12 +86,12 @@ Python:
* The official [Python tutorial][python-tutorial] is somewhat advanced, but has a lot of information
* The [TutorialsPoint Python tutorial][tp-tutorial] is also well done, and perhaps easier to follow
* When I have a Python question, usually someone on [Stack Overflow][stack-overflow] has an answer
* The [CSDMS Ivy][ivy] course material

CU Boulder:
* [Community Surface Dynamics Modeling System (CSDMS)][csdms]
* [Cooperative Institute for Research in Environmental Sciences (CIRES)][cires]
* [EarthLab][earthlab]
* [Earth Surface Processes Institute (ESPIn)][espin] summer school


## Acknowledgments
Expand All @@ -109,8 +117,8 @@ from their website at https://psl.noaa.gov/data/gridded/data.20thC_ReanV2.html.
[csdms-award]: https://nsf.gov/awardsearch/showAward?AWD_ID=1831623
[dc]: https://datacarpentry.org/
[earthlab]: https://earthlab.colorado.edu/
[espin]: https://github.com/csdms/espin
[nbgitpuller-link]: https://csdms.rc.colorado.edu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Fcsdms%2Freccs-2021&urlpath=tree%2Freccs-2021%2Fnotebooks%2F0_overview.ipynb&branch=main
[ivy]: https://github.com/csdms/ivy
[nbgitpuller-link]: https://lab.openearthscape.org/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Fcsdms%2Freccs&urlpath=lab%2Ftree%2Freccs%2Fnotebooks%2F0_overview.ipynb%3Fautodecode&branch=main
[python-tutorial]: https://docs.python.org/3/tutorial/
[reccs]: https://cires.colorado.edu/outreach/reccs
[swc]: https://software-carpentry.org/
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4 changes: 2 additions & 2 deletions notebooks/6_noaa_cires_reanalysis_temperature_data.ipynb
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Expand Up @@ -73,7 +73,7 @@
"import calendar\n",
"import math\n",
"import numpy as np\n",
"from scipy.io import netcdf\n",
"from scipy.io import netcdf_file\n",
"from matplotlib import pyplot as plt\n",
"from mpl_toolkits.basemap import Basemap"
]
Expand Down Expand Up @@ -112,7 +112,7 @@
"\n",
" \"\"\"\n",
" try:\n",
" f = netcdf.netcdf_file(reanalysis_file, 'r', mmap=False)\n",
" f = netcdf_file(reanalysis_file, 'r', mmap=False)\n",
" except IOError:\n",
" print('File \"' + reanalysis_file + '\" cannot be read.')\n",
" return\n",
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