deconverse: bulk RNA-seq deconvolution benchmark using single-cell reference profiles

Note: This package is still immature, APIs are not yet well documented and may change

Installation

To install, run:

remotes::install_github("csgroen/deconverse")

docker or singularity must be available to run some deconvolution methods. To install, see: https://docs.docker.com/get-docker/

To install CIBERSORTx docker, run:

library(deconverse)
install_cibersortx()

Usage

See the PBMC tutorial to get started.